MirGeneDB 3.0

MirGeneDB ID

Sko-Mir-4828-P4

Family name MIR-4828 (all species)
Seed GUAAAUA
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID
Paralogues Sko-Mir-4828-P1  Sko-Mir-4828-P2  Sko-Mir-4828-P3 
Orthologues Pfl-Mir-4828-P4 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)
NW_003123408.1: 368417-368477 [-]
Clustered miRNAs
(< 50kb from Mir-4828-P4)
Mir-4828-P3 NW_003123408.1: 368589-368648 [-]
Mir-4828-P1 NW_003123408.1: 368928-368991 [-]
Precursor
(pre-Mir +30nt flank)
ACAAGUUUGCUGUGAAGACUACUUACACUCCAGUCUCAAUGUGUAUUUUCAUCUGUACUCUGUUAAUACAGUAAAUACCAUUGAGAUUGCAGAGUCUGUGGUCGCCAUUCAACGAUGAAUC
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Structure
        10          20        30        40        50        60
ACAAGUUUGCUGUGAAG--|    UU  A  C           U      UCAUCUGUACU 
                   ACUAC  AC CU CAGUCUCAAUG GUAUUU           C
                   UGGUG  UG GA GUUAGAGUUAC CAUAAA           U
CUAAGUAGCAACUUACCGC^    UC  A  C           -      UGACAUAAUUG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
To
Star sequence

Sko-Mir-4828-P4_5p* (predicted)

mirBase accessionNone
Sequence
0- CAGUCUCAAUGUGUAUUUUCAUC -23
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Mature sequence

Sko-Mir-4828-P4_3p

mirBase accessionNone
Sequence
39- AGUAAAUACCAUUGAGAUUGCA -61
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