MirGeneDB 3.0

MirGeneDB ID

Pfl-Mir-4828-P4

Family name MIR-4828 (all species)
Seed GUAAAUA
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-4828-P1  Pfl-Mir-4828-P2  Pfl-Mir-4828-P3 
Orthologues Sko-Mir-4828-P4 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Pfl)
LD343010.1: 765234-765296 [-]
Precursor
(pre-Mir +30nt flank)
GUAUUUCCCAGAGAGAGACGGGUCACACUUCAAUCUCAUUGCGUAUUUUCAUCUGUGCUUUUUGUGCUAACAGUAAAUACCAUUGAGAUUGCAGGGUCUUCUGUCACAAGUCUUCCUCAGCUA
Get precursor sequence
Structure
        10          20        30         40        50        60 
GUAUUUCCCAGAGAGAG--|    UC  A   -        U  C      UCAUCUGUGCUU 
                   ACGGG  AC CUU CAAUCUCA UG GUAUUU            U
                   UGUCU  UG GGA GUUAGAGU AC CAUAAA            U
AUCGACUCCUUCUGAACAC^    UC  -   C        U  -      UGACAAUCGUGU 
 120       110       100         90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
To
Star sequence

Pfl-Mir-4828-P4_5p* (predicted)

mirBase accessionNone
Sequence
0- CAAUCUCAUUGCGUAUUUUCAUC -23
Get sequence
Mature sequence

Pfl-Mir-4828-P4_3p

mirBase accessionNone
Sequence
41- AGUAAAUACCAUUGAGAUUGCA -63
Get sequence