MirGeneDB 3.0
MirGeneDB ID

Pfl-Mir-4828-P3

Family name MIR-4828 (all species)
Seed GUAAAUG
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-4828-P1  Pfl-Mir-4828-P2  Pfl-Mir-4828-P4 
Orthologues Sko-Mir-4828-P3 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Pfl)		 LD343010.1: 765387-765446 [-]
Precursor
(pre-Mir +30nt flank)
UUCUAACUUUUGACCAUGGCUCUUGCCAGCCAAUCUGAAUGUGCAUUUUCACUGUGUGUCUAUACAACAGUAAAUGCCAUUCAGGUUGACUGGAGGGAGUGUGUAGCAGCGGCAAACUUA
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Structure
        10          20        30        40        50        60 
UUCUAACUUUUGACCAUG--|    UG    C           U      UC   GUGUGUC 
                    GCUCU  CCAG CAAUCUGAAUG GCAUUU  ACU       \
                    UGAGG  GGUC GUUGGACUUAC CGUAAA  UGA       U
AUUCAAACGGCGACGAUGUG^    GA    A           -      --   CAACAUA 
.       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Pfl-Mir-4828-P3_5p*
mirBase accessionNone
Sequence 
0- CAAUCUGAAUGUGCAUUUUCACU -23
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Mature sequence

Pfl-Mir-4828-P3_3p
mirBase accessionNone
Sequence 
38- AGUAAAUGCCAUUCAGGUUGAC -60
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