MirGeneDB 3.0

MirGeneDB ID

Sko-Mir-4828-P3

Family name MIR-4828 (all species)
Seed GUAAAUG
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4828b
Paralogues Sko-Mir-4828-P1  Sko-Mir-4828-P2  Sko-Mir-4828-P4 
Orthologues Pfl-Mir-4828-P3 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)
NW_003123408.1: 368589-368648 [-]
Clustered miRNAs
(< 50kb from Mir-4828-P3)
Mir-4828-P3 NW_003123408.1: 368589-368648 [-]
Mir-4828-P1 NW_003123408.1: 368928-368991 [-]
Precursor
(pre-Mir +30nt flank)
GAUAUAUUGUGUGGACUGACUCUGGCCGGCCAGCCUAAAUGGCACUUUACACUGCAUACAUUCACAGCAGUAAAUGCCAUUCAGGUUGACUGGAAAGUGUCUUCAAACACCUGUACAGCA
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Structure
        10          20        30        40        50        60 
GAUAUAUUGUGUGGACU--|  U  GG    C      A       C   AC     AUACA 
                   GAC CU  CCGG CAGCCU AAUGGCA UUU  ACUGC     \
                   CUG GA  GGUC GUUGGA UUACCGU AAA  UGACG     U
ACGACAUGUCCACAAACUU^  U  AA    A      C       -   --     ACACU 
.       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Sko-Mir-4828-P3_5p* (predicted)

mirBase accessionNone
Sequence
0- CAGCCUAAAUGGCACUUUACACUGC -25
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Mature sequence

Sko-Mir-4828-P3_3p

mirBase accessionMIMAT0020037
Sequence
38- AGUAAAUGCCAUUCAGGUUGAC -60
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