MirGeneDB 3.0
MirGeneDB ID

Sko-Mir-4828-P1

Family name MIR-4828 (all species)
Seed GUAAAUA
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4828a
Paralogues Sko-Mir-4828-P2  Sko-Mir-4828-P3  Sko-Mir-4828-P4 
Orthologues Pfl-Mir-4828-P1 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)		 NW_003123408.1: 368928-368991 [-]
Clustered miRNAs
(< 50kb from Mir-4828-P1)		 Mir-4828-P3 NW_003123408.1: 368589-368648 [-]
Mir-4828-P1 NW_003123408.1: 368928-368991 [-]
Precursor
(pre-Mir +30nt flank)
AAGAUGUAGAUUCUCCUGGGGCAUACCCUUCAGUCUGGAUGUGUAUUUUCAUCUGUUGGUAUCAAUCUAUACAGUAAAUACCAUUCAGAUUGCAGGGUGGUCCUUCCAAGCAAGUUUAAGUCUU
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Structure
        10           20        30        40        50        60  
AAGAUGUAGAUUCUCCU---|    A      U           U      UCAUCUGUUGGUA 
                    GGGGC UACCCU CAGUCUGGAUG GUAUUU             \
                    UCCUG GUGGGA GUUAGACUUAC CAUAAA             U
UUCUGAAUUUGAACGAACCU^    -      C           -      UGACAUAUCUAAC 
  120       110       100         90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
To
Star sequence

Sko-Mir-4828-P1_5p* (predicted)
mirBase accessionNone
Sequence 
0- CAGUCUGGAUGUGUAUUUUCAUC -23
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Mature sequence

Sko-Mir-4828-P1_3p
mirBase accessionMIMAT0020036
Sequence 
42- AGUAAAUACCAUUCAGAUUGCA -64
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