MirGeneDB 3.0
MirGeneDB ID

Pfl-Mir-4828-P1

Family name MIR-4828 (all species)
Seed GUAAAUA
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-4828-P2  Pfl-Mir-4828-P3  Pfl-Mir-4828-P4 
Orthologues Sko-Mir-4828-P1 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Pfl)		 LD343010.1: 765739-765802 [-]
Precursor
(pre-Mir +30nt flank)
AGCUGCCGAUUAACUUUUGGAGUGACCUUUCAGUCUGAUUGGUAUUUUCAUCUGUUGGUAAAAUAGCCAUACAGUAAAUACCAUUCAGAUUGCAAGGUUAUCCCUAAAAUCUUCACUUUUUGGG
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Structure
        10          20        30        40        50        60 
AGCUGCCGAUUAACUUUU--| AG       U        U        UCAUCUGUUGGUA 
                    GG  UGACCUU CAGUCUGA UGGUAUUU             A
                    CC  AUUGGAA GUUAGACU ACCAUAAA             A
GGGUUUUUCACUUCUAAAAU^ CU       C        U        UGACAUACCGAUA 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Pfl-Mir-4828-P1_5p* (predicted)
mirBase accessionNone
Sequence 
0- CAGUCUGAUUGGUAUUUUCAUC -22
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Mature sequence

Pfl-Mir-4828-P1_3p
mirBase accessionNone
Sequence 
42- AGUAAAUACCAUUCAGAUUGCA -64
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