| MirGeneDB ID | Sma-Mir-87-o32 |
|---|
| Family name |
MIR-87 (all species) |
|---|
| Seed |
UGAGCAA |
|---|
| Species |
Blood fluke (Schistosoma mansoni) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
|---|
| Node of Origin (locus) |
Protostomia
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCA_000237925.5_SM_V9_genomic) |
HE601626.3: 12868984-12869221 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUUCAAUUUUAAUCUACCGAGAACUUGUACCCGCCUGUAACUAUGCUCAAACCAAAUAACGAUUAAACUUAUUGAGAAUUUUCUGAUUAAAUCAACAAAAAAAAGAAAAGAAAUAUUAUUCCAUCAAAACUAAUCGAUAUUCAAUGAAUUUACCAAAAAAUAAUCAAUUAUGAAUAUCAUUAGUGAGAAUAAUGUUUCUAUUCAGAAAAUUUUUCUCAAUUUUGUUUAAUUAUCUUCUUUUGAUUGGUGAGCAAAGUUUCAGGUGUGUCAACAUUCGGUUGAACAUCUUUAAUUGAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70 80 90 100 110 120 130 140
UUUCAAUUUUAAUCUAC----| AAC U C U A AA AAUAACGAUUAAACUUAUUGAGAAUUUUCUGAUUAAAUCAACAAAAAAAAGAAAAGAAAUAUUAUUCCAUCAAAACUAAUCGAUAUUCAAUGAA
CGAG UUG AC CGCCUG AACU UGCUC ACCA U
GCUU AAC UG GUGGAC UUGA ACGAG UGGU U
UUAGUUAAUUUCUACAAGUUG^ AC- - U U A -- UAGUUUUCUUCUAUUAAUUUGUUUUAACUCUUUUUAAAAGACUUAUCUUUGUAAUAAGAGUGAUUACUAUAAGUAUUAACUAAUAAAAAACCAU
290 280 270 260 250 240 230 220 210 200 190 180 170 160 150 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Sma-Mir-87-o32_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CCGCCUGUAACUAUGCUCAAACCA -24
Get sequence
|
|---|
| Mature sequence |
Sma-Mir-87-o32_3p |
| mirBase accession | None |
|---|
| Sequence |
216- GUGAGCAAAGUUUCAGGUGUGU -238
Get sequence
|
|---|
