MirGeneDB ID | Tca-Mir-927-P2 |
Family name |
MIR-927 (all species) |
Seed |
UUAGAAU |
Species |
Red flour beetle (Tribolium castaneum) |
MiRBase ID |
tca-mir-927b
|
Paralogues |
Tca-Mir-927-P1
|
Orthologues |
Aae-Mir-927-P2
Aga-Mir-927-P2
Bge-Mir-927-P2-v1
Bge-Mir-927-P2-v2
Dlo-Mir-927-P2
Hme-Mir-927-P2
|
Node of Origin (locus) |
Neoptera
|
Node of Origin (family) |
Neoptera
|
Genome context (Tcas5.2) |
LG9: 11684286-11684344 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCGCUAAACCGCCCUUUGAGCCCUUCCGGUUUUAGAAUCUGUACGCUUUGUUGUUACUUUAAAAUCACAGAGCUUACGGAUUCUCGAACUGGUGGAGUAUUAAACGCCCAGUUAAUUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
CCGCUAAACCGCCCUUUGA-- -| UU U C UGUUACU
GC CC CCGGUUU AGAAUCUGUA GCUUUGU \
UG GG GGUCAAG UCUUAGGCAU CGAGACA U
UGUUAAUUGACCCGCAAAUUA A^ U- C U CUAAAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Ad |
Ea |
Em |
Em |
Em |
Em |
Em |
Fe |
Fe |
Fe |
Fe |
Oo |
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Mature sequence |
Tca-Mir-927-P2_5p |
mirBase accession | MIMAT0023579 |
Sequence |
0- UUUAGAAUCUGUACGCUUUGUUG -23
Get sequence
|
Star sequence |
Tca-Mir-927-P2_3p* |
mirBase accession | MIMAT0023580 |
Sequence |
36- ACAGAGCUUACGGAUUCUCGAAC -59
Get sequence
|