MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-124-P1b-v1

Family name MIR-124 (all species)
Seed AAGGCAC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-124-1
Paralogues Tni-Mir-124-P1b-v2  Tni-Mir-124-P2a-v1  Tni-Mir-124-P2a-v2  Tni-Mir-124-P2b-v1  Tni-Mir-124-P2b-v2  Tni-Mir-124-P4-v1  Tni-Mir-124-P4-v2 
Orthologues Aae-Mir-124  Aca-Mir-124-P1-v1  Aca-Mir-124-P1-v2  Ami-Mir-124-P1-v1  Ami-Mir-124-P1-v2  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bla-Mir-124  Bta-Mir-124-P1-v1  Bta-Mir-124-P1-v2  Cel-Mir-124  Cfa-Mir-124-P1-v1  Cfa-Mir-124-P1-v2  Cli-Mir-124-P1-v1  Cli-Mir-124-P1-v2  Cmi-Mir-124-P1-v1  Cmi-Mir-124-P1-v2  Cpi-Mir-124-P1-v1  Cpi-Mir-124-P1-v2  Cpo-Mir-124-P1-v1  Cpo-Mir-124-P1-v2  Cte-Mir-124  Dan-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dno-Mir-124-P1-v1  Dno-Mir-124-P1-v2  Dpu-Mir-124  Dre-Mir-124-P1b-v1  Dre-Mir-124-P1b-v2  Dsi-Mir-124  Dya-Mir-124  Esc-Mir-124  Ete-Mir-124-P1-v1  Ete-Mir-124-P1-v2  Gga-Mir-124-P1-v1  Gga-Mir-124-P1-v2  Gja-Mir-124-P1-v1  Gja-Mir-124-P1-v2  Gmo-Mir-124-P1b-v1  Gmo-Mir-124-P1b-v2  Hme-Mir-124  Hsa-Mir-124-P1-v1  Hsa-Mir-124-P1-v2  Isc-Mir-124  Lan-Mir-124  Lch-Mir-124-P1  Loc-Mir-124-P1-v1  Loc-Mir-124-P1-v2  Mal-Mir-124-P1b-v1  Mal-Mir-124-P1b-v2  Mdo-Mir-124-P1-v1  Mdo-Mir-124-P1-v2  Mml-Mir-124-P1-v1  Mml-Mir-124-P1-v2  Mmu-Mir-124-P1-v1  Mmu-Mir-124-P1-v2  Mun-Mir-124-P1-v1  Mun-Mir-124-P1-v2  Npo-Mir-124  Oan-Mir-124-P1-v1  Oan-Mir-124-P1-v2  Obi-Mir-124  Ocu-Mir-124-P1-v1  Ocu-Mir-124-P1-v2  Ovu-Mir-124  Pbv-Mir-124-P1-v1  Pbv-Mir-124-P1-v2  Pfl-Mir-124  Pma-Mir-124-o1  Pmi-Mir-124  Rno-Mir-124-P1-v1  Rno-Mir-124-P1-v2  Sha-Mir-124-P1-v1  Sha-Mir-124-P1-v2  Sko-Mir-124  Spt-Mir-124-P1  Spu-Mir-124  Sto-Mir-124-P1-v1  Sto-Mir-124-P1-v2  Tca-Mir-124  Tgu-Mir-124-P1-v1  Tgu-Mir-124-P1-v2  Xbo-Mir-124  Xtr-Mir-124-P1-v1  Xtr-Mir-124-P1-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
6: 3469441-3469499 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-124-P1b-v1)
Mir-124-P1b-v1 6: 3469441-3469499 [-] UCSC Ensembl
Mir-124-P1b-v2 6: 3469442-3469499 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACACACACACAGAAGCGGGUUUGUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCUUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAUGACCCUUCUCUCCUCGGCUGACAUG
Get precursor sequence
Structure
        10           20        30        40        50         
CACACACACACAGAAGC---|  U UG     CC        A   GA       UUAAUG 
                    GGG U  UCUCU  GUGUUCAC GCG  CCUUGAU      \
                    CCC A  AGAGA  CGUAAGUG CGC  GGAAUUA      U
GUACAGUCGGCUCCUCUCUU^  - GU     AC        G   AC       ACAUUC 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-124-P1b-v1_5p*

mirBase accessionNone
Sequence
0- CGUGUUCACAGCGGACCUUGAU -22
Get sequence
Mature sequence

Tni-Mir-124-P1b-v1_3p

mirBase accessionMIMAT0002897
Sequence
37- UAAGGCACGCGGUGAAUGCCAA -59
Get sequence