MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-124-P4-v1

Family name MIR-124 (all species)
Seed AAGGCAC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-124-3
Paralogues Tni-Mir-124-P1b-v1  Tni-Mir-124-P1b-v2  Tni-Mir-124-P2a-v1  Tni-Mir-124-P2a-v2  Tni-Mir-124-P2b-v1  Tni-Mir-124-P2b-v2  Tni-Mir-124-P4-v2 
Orthologues Aae-Mir-124  Aca-Mir-124-P4-v1  Aca-Mir-124-P4-v2  Aga-Mir-124  Agr-Mir-124  Ami-Mir-124-P4-v1  Ami-Mir-124-P4-v2  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bko-Mir-124  Bla-Mir-124  Bpl-Mir-124  Cel-Mir-124  Cmi-Mir-124-P4  Cpi-Mir-124-P4-v1  Cpi-Mir-124-P4-v2  Cte-Mir-124  Dan-Mir-124  Dlo-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dre-Mir-124-P4-v1  Dre-Mir-124-P4-v2  Dsi-Mir-124  Dya-Mir-124  Eba-Mir-124  Esc-Mir-124  Gga-Mir-124-P4-v1  Gga-Mir-124-P4-v2  Gja-Mir-124-P4-v1  Gja-Mir-124-P4-v2  Gmo-Mir-124-P4-v1  Gmo-Mir-124-P4-v2  Gpa-Mir-124  Gsp-Mir-124  Hme-Mir-124  Hru-Mir-124  Isc-Mir-124  Lan-Mir-124  Lch-Mir-124-P4  Lhy-Mir-124  Llo-Mir-124  Loc-Mir-124-P4-v1  Loc-Mir-124-P4-v2  Mal-Mir-124-P4-v1  Mal-Mir-124-P4-v2  Mgi-Mir-124  Mom-Mir-124  Mun-Mir-124-P4-v1  Mun-Mir-124-P4-v2  Npo-Mir-124  Oan-Mir-124-P4-v1  Oan-Mir-124-P4-v2  Obi-Mir-124  Ofu-Mir-124  Ovu-Mir-124  Pau-Mir-124  Pbv-Mir-124-P4a  Pbv-Mir-124-P4b-v1  Pbv-Mir-124-P4b-v2  Pcr-Mir-124-o4  Pdu-Mir-124  Pfl-Mir-124  Pmi-Mir-124  Pve-Mir-124  Sko-Mir-124  Sma-Mir-124  Sne-Mir-124  Snu-Mir-124  Spt-Mir-124-P4  Spu-Mir-124  Sro-Mir-124  Sto-Mir-124-P4-v1  Sto-Mir-124-P4-v2  Tca-Mir-124  War-Mir-124  Xbo-Mir-124 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 10: 7519420-7519479 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-124-P4-v1)		 Mir-124-P4-v1 10: 7519420-7519479 [+] UCSC Ensembl
Mir-124-P4-v2 10: 7519420-7519478 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAUUUAGUGAGUUUUGGGUUUGAGCUCUUUGUGUUCACAGUGGACCUUGAUUUAAUUUCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCCACAGUCUUCGCUUCCCUCGG
Get precursor sequence
Structure
        10           20        30        40        50         
ACAUUUAGUGAGUUUUG---|    GAG     U        A   GA       UUAAUU 
                    GGUUU   CUCUU GUGUUCAC GUG  CCUUGAU      U
                    CCGAA   GAGAA CGUAAGUG CGC  GGAAUUA      C
GGCUCCCUUCGCUUCUGACA^    GA-     C        G   AC       ACAUAA 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-124-P4-v1_5p*
mirBase accessionNone
Sequence 
0- UGUGUUCACAGUGGACCUUGAU -22
Get sequence
Mature sequence

Tni-Mir-124-P4-v1_3p
mirBase accessionMIMAT0002897
Sequence 
38- UAAGGCACGCGGUGAAUGCCAA -60
Get sequence