Mir-124-P4-v1

MirGeneDB ID

Tni-Mir-124-P4-v1

Family name

MIR-124 (all species)

Seed

AAGGCAC

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-124-3

Paralogues

Tni-Mir-124-P1b-v1 Tni-Mir-124-P1b-v2 Tni-Mir-124-P2a-v1 Tni-Mir-124-P2a-v2 Tni-Mir-124-P2b-v1 Tni-Mir-124-P2b-v2 Tni-Mir-124-P4-v2

Orthologues

Aae-Mir-124 Aca-Mir-124-P4-v1 Aca-Mir-124-P4-v2 Ami-Mir-124-P4-v1 Ami-Mir-124-P4-v2 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bla-Mir-124 Cel-Mir-124 Cmi-Mir-124-P4 Cpi-Mir-124-P4-v1 Cpi-Mir-124-P4-v2 Cte-Mir-124 Dan-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dre-Mir-124-P4-v1 Dre-Mir-124-P4-v2 Dsi-Mir-124 Dya-Mir-124 Esc-Mir-124 Gga-Mir-124-P4-v1 Gga-Mir-124-P4-v2 Gja-Mir-124-P4-v1 Gja-Mir-124-P4-v2 Gmo-Mir-124-P4-v1 Gmo-Mir-124-P4-v2 Hme-Mir-124 Isc-Mir-124 Lan-Mir-124 Lch-Mir-124-P4 Loc-Mir-124-P4-v1 Loc-Mir-124-P4-v2 Mal-Mir-124-P4-v1 Mal-Mir-124-P4-v2 Mun-Mir-124-P4-v1 Mun-Mir-124-P4-v2 Npo-Mir-124 Oan-Mir-124-P4-v1 Oan-Mir-124-P4-v2 Obi-Mir-124 Ovu-Mir-124 Pbv-Mir-124-P4a Pbv-Mir-124-P4b-v1 Pbv-Mir-124-P4b-v2 Pfl-Mir-124 Pmi-Mir-124 Sko-Mir-124 Spt-Mir-124-P4 Spu-Mir-124 Sto-Mir-124-P4-v1 Sto-Mir-124-P4-v2 Tca-Mir-124 Xbo-Mir-124

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

10: 7519420-7519479 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-124-P4-v1)

Mir-124-P4-v1 10: 7519420-7519479 [+] UCSC Ensembl
Mir-124-P4-v2 10: 7519420-7519478 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACAUUUAGUGAGUUUUGGGUUUGAGCUCUUUGUGUUCACAGUGGACCUUGAUUUAAUUUCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCCACAGUCUUCGCUUCCCUCGG

Get precursor sequence

Structure

        10           20        30        40        50         
ACAUUUAGUGAGUUUUG---|    GAG     U        A   GA       UUAAUU 
                    GGUUU   CUCUU GUGUUCAC GUG  CCUUGAU      U
                    CCGAA   GAGAA CGUAAGUG CGC  GGAAUUA      C
GGCUCCCUUCGCUUCUGACA^    GA-     C        G   AC       ACAUAA 
.       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-124-P4-v1_5p*

mirBase accession

None

Sequence

0- UGUGUUCACAGUGGACCUUGAU -22

Get sequence

Mature sequence

Tni-Mir-124-P4-v1_3p

mirBase accession

MIMAT0002897

Sequence

38- UAAGGCACGCGGUGAAUGCCAA -60

Get sequence