MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-124-P4-v1

Family name MIR-124 (all species)
Seed AAGGCAC
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-124-P1-v1  Gja-Mir-124-P1-v2  Gja-Mir-124-P2-v1  Gja-Mir-124-P2-v2  Gja-Mir-124-P3-v1  Gja-Mir-124-P3-v2  Gja-Mir-124-P4-v2 
Orthologues Aae-Mir-124  Aca-Mir-124-P4-v1  Aca-Mir-124-P4-v2  Aga-Mir-124  Agr-Mir-124  Ami-Mir-124-P4-v1  Ami-Mir-124-P4-v2  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bko-Mir-124  Bla-Mir-124  Bpl-Mir-124  Cel-Mir-124  Cmi-Mir-124-P4  Cpi-Mir-124-P4-v1  Cpi-Mir-124-P4-v2  Cte-Mir-124  Dan-Mir-124  Dlo-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dre-Mir-124-P4-v1  Dre-Mir-124-P4-v2  Dsi-Mir-124  Dya-Mir-124  Eba-Mir-124  Esc-Mir-124  Gga-Mir-124-P4-v1  Gga-Mir-124-P4-v2  Gmo-Mir-124-P4-v1  Gmo-Mir-124-P4-v2  Gpa-Mir-124  Gsp-Mir-124  Hme-Mir-124  Hru-Mir-124  Isc-Mir-124  Lan-Mir-124  Lch-Mir-124-P4  Lhy-Mir-124  Llo-Mir-124  Loc-Mir-124-P4-v1  Loc-Mir-124-P4-v2  Mal-Mir-124-P4-v1  Mal-Mir-124-P4-v2  Mgi-Mir-124  Mom-Mir-124  Mun-Mir-124-P4-v1  Mun-Mir-124-P4-v2  Npo-Mir-124  Oan-Mir-124-P4-v1  Oan-Mir-124-P4-v2  Obi-Mir-124  Ofu-Mir-124  Ovu-Mir-124  Pau-Mir-124  Pbv-Mir-124-P4a  Pbv-Mir-124-P4b-v1  Pbv-Mir-124-P4b-v2  Pcr-Mir-124-o4  Pdu-Mir-124  Pfl-Mir-124  Pmi-Mir-124  Pve-Mir-124  Sko-Mir-124  Sma-Mir-124  Sne-Mir-124  Snu-Mir-124  Spt-Mir-124-P4  Spu-Mir-124  Sro-Mir-124  Sto-Mir-124-P4-v1  Sto-Mir-124-P4-v2  Tca-Mir-124  Tni-Mir-124-P4-v1  Tni-Mir-124-P4-v2  War-Mir-124  Xbo-Mir-124 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015174874.1: 301872-301931 [-]
Precursor
(pre-Mir +30nt flank)
UACCUGCUUCGCCCCUCGGCUUAAGCCCUUCGUGUUCACAGCGGACCUUGAUUUAAUUUCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCCGCCCUCCUACCCUUUUCUUU
Get precursor sequence
Structure
        10           20        30        40        50         
UACCUGCUUCGCCCCUC---|    AAGCC   C        A   GA       UUAAUU 
                    GGCUU     CUU GUGUUCAC GCG  CCUUGAU      U
                    CCGAA     GAA CGUAAGUG CGC  GGAAUUA      C
UUUCUUUUCCCAUCCUCCCG^    GAGA-   C        G   AC       ACAUAA 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gja-Mir-124-P4-v1_5p*
mirBase accessionNone
Sequence 
0- CGUGUUCACAGCGGACCUUGAU -22
Get sequence
Mature sequence

Gja-Mir-124-P4-v1_3p
mirBase accessionNone
Sequence 
38- UAAGGCACGCGGUGAAUGCCAA -60
Get sequence