Mir-124-P4-v2

MirGeneDB ID

Cpi-Mir-124-P4-v2

Family name

MIR-124 (all species)

Seed

UAAGGCA

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-124-4

Paralogues

Cpi-Mir-124-P1-v1 Cpi-Mir-124-P1-v2 Cpi-Mir-124-P2-v1 Cpi-Mir-124-P2-v2 Cpi-Mir-124-P3-v1 Cpi-Mir-124-P3-v2 Cpi-Mir-124-P4-v1

Orthologues

Aae-Mir-124 Aca-Mir-124-P4-v1 Aca-Mir-124-P4-v2 Aga-Mir-124 Agr-Mir-124 Ami-Mir-124-P4-v1 Ami-Mir-124-P4-v2 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Cel-Mir-124 Cmi-Mir-124-P4 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dre-Mir-124-P4-v1 Dre-Mir-124-P4-v2 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Esc-Mir-124 Gga-Mir-124-P4-v1 Gga-Mir-124-P4-v2 Gja-Mir-124-P4-v1 Gja-Mir-124-P4-v2 Gmo-Mir-124-P4-v1 Gmo-Mir-124-P4-v2 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Isc-Mir-124 Lan-Mir-124 Lch-Mir-124-P4 Lhy-Mir-124 Llo-Mir-124 Loc-Mir-124-P4-v1 Loc-Mir-124-P4-v2 Mal-Mir-124-P4-v1 Mal-Mir-124-P4-v2 Mgi-Mir-124 Mom-Mir-124 Mun-Mir-124-P4-v1 Mun-Mir-124-P4-v2 Npo-Mir-124 Oan-Mir-124-P4-v1 Oan-Mir-124-P4-v2 Obi-Mir-124 Ofu-Mir-124 Ovu-Mir-124 Pau-Mir-124 Pbv-Mir-124-P4a Pbv-Mir-124-P4b-v1 Pbv-Mir-124-P4b-v2 Pcr-Mir-124-o4 Pdu-Mir-124 Pfl-Mir-124 Pmi-Mir-124 Pve-Mir-124 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spt-Mir-124-P4 Spu-Mir-124 Sro-Mir-124 Sto-Mir-124-P4-v1 Sto-Mir-124-P4-v2 Tca-Mir-124 Tni-Mir-124-P4-v1 Tni-Mir-124-P4-v2 War-Mir-124 Xbo-Mir-124

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(chrPic1)

JH584506: 1072250-1072307 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-124-P4-v2)

Mir-124-P4-v1 JH584506: 1072250-1072308 [+] UCSC Ensembl
Mir-124-P4-v2 JH584506: 1072250-1072307 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGGUUCCUUCGCCGCUCGGCUUCCGCUUUUCGUGUUCACAGCGGACCUUGAUUUAAUUUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCCGGACUCGUACGCCUCUCCC

Get precursor sequence

Structure

        10          20        30        40        50         
CGGUUCCUUCGCCGCUC--|     CG     C        A   GA        UAAUU 
                   GGCUUC  CUUUU GUGUUCAC GCG  CCUUGAUU     \
                   CCGAAG  GAGAA CGUAAGUG CGC  GGAAUUAA     U
CCCUCUCCGCAUGCUCAGG^     A-     C        G   AC        CAUAC 
      110       100         90        80        70        60