MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-124-P4-v2

Family name MIR-124 (all species)
Seed UAAGGCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-124-4
Paralogues Ami-Mir-124-P1-v1  Ami-Mir-124-P1-v2  Ami-Mir-124-P2-v1  Ami-Mir-124-P2-v2  Ami-Mir-124-P3-v1  Ami-Mir-124-P3-v2  Ami-Mir-124-P4-v1 
Orthologues Aae-Mir-124  Aca-Mir-124-P4-v1  Aca-Mir-124-P4-v2  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bla-Mir-124  Cel-Mir-124  Cmi-Mir-124-P4  Cpi-Mir-124-P4-v1  Cpi-Mir-124-P4-v2  Cte-Mir-124  Dan-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dre-Mir-124-P4-v1  Dre-Mir-124-P4-v2  Dsi-Mir-124  Dya-Mir-124  Esc-Mir-124  Gga-Mir-124-P4-v1  Gga-Mir-124-P4-v2  Gja-Mir-124-P4-v1  Gja-Mir-124-P4-v2  Gmo-Mir-124-P4-v1  Gmo-Mir-124-P4-v2  Hme-Mir-124  Isc-Mir-124  Lan-Mir-124  Lch-Mir-124-P4  Loc-Mir-124-P4-v1  Loc-Mir-124-P4-v2  Mal-Mir-124-P4-v1  Mal-Mir-124-P4-v2  Mun-Mir-124-P4-v1  Mun-Mir-124-P4-v2  Npo-Mir-124  Oan-Mir-124-P4-v1  Oan-Mir-124-P4-v2  Obi-Mir-124  Ovu-Mir-124  Pbv-Mir-124-P4a  Pbv-Mir-124-P4b-v1  Pbv-Mir-124-P4b-v2  Pfl-Mir-124  Pmi-Mir-124  Sko-Mir-124  Spt-Mir-124-P4  Spu-Mir-124  Sto-Mir-124-P4-v1  Sto-Mir-124-P4-v2  Tca-Mir-124  Tni-Mir-124-P4-v1  Tni-Mir-124-P4-v2  Xbo-Mir-124 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017710560.1: 925379-925436 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-124-P4-v2)
Mir-124-P4-v1 NW_017710560.1: 925378-925436 [-] UCSC
Mir-124-P4-v2 NW_017710560.1: 925379-925436 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GGGACCCUCCGGACCGCGGCCUCGGCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCACACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGGGCCGCCCUGCACCGCCCGGGGC
Get precursor sequence
Structure
        10          20        30        40        50         
GGGACCCUCCGGACCGC--|     GG    CC        A   GA        UAAUG 
                   GGCCUC  CUCU  GUGUUCAC GCG  CCUUGAUU     \
                   CCGGGG  GAGA  CGUAAGUG CGC  GGAAUUAA     U
CGGGGCCCGCCACGUCCCG^     A-    AC        G   AC        CACAC 
      110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ami-Mir-124-P4-v2_5p*

mirBase accessionMIMAT0038125
Sequence
0- CGUGUUCACAGCGGACCUUGAUU -23
Get sequence
Mature sequence

Ami-Mir-124-P4-v2_3p

mirBase accessionMIMAT0038126
Sequence
36- UUAAGGCACGCGGUGAAUGCCA -58
Get sequence