MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-124-P2-v2

Family name MIR-124 (all species)
Seed UAAGGCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-124-1
Paralogues Ami-Mir-124-P1-v1  Ami-Mir-124-P1-v2  Ami-Mir-124-P2-v1  Ami-Mir-124-P3-v1  Ami-Mir-124-P3-v2  Ami-Mir-124-P4-v1  Ami-Mir-124-P4-v2 
Orthologues Aae-Mir-124  Aca-Mir-124-P2-v1  Aca-Mir-124-P2-v2  Aga-Mir-124  Agr-Mir-124  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bko-Mir-124  Bla-Mir-124  Bpl-Mir-124  Bta-Mir-124-P2-v1  Bta-Mir-124-P2-v2  Cel-Mir-124  Cfa-Mir-124-P2-v1  Cfa-Mir-124-P2-v2  Cja-Mir-124-P2-v1  Cja-Mir-124-P2-v2  Cmi-Mir-124-P2-v1  Cmi-Mir-124-P2-v2  Cpi-Mir-124-P2-v1  Cpi-Mir-124-P2-v2  Cpo-Mir-124-P2-v1  Cpo-Mir-124-P2-v2  Cte-Mir-124  Dan-Mir-124  Dlo-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dno-Mir-124-P2-v1  Dno-Mir-124-P2-v2  Dpu-Mir-124  Dre-Mir-124-P2a-v1  Dre-Mir-124-P2a-v2  Dsi-Mir-124  Dya-Mir-124  Eba-Mir-124  Eca-Mir-124-P2-v1  Eca-Mir-124-P2-v2  Esc-Mir-124  Ete-Mir-124-P2-v1  Ete-Mir-124-P2-v2  Gga-Mir-124-P2-v1  Gga-Mir-124-P2-v2  Gja-Mir-124-P2-v1  Gja-Mir-124-P2-v2  Gpa-Mir-124  Gsp-Mir-124  Hme-Mir-124  Hru-Mir-124  Hsa-Mir-124-P2-v1  Hsa-Mir-124-P2-v2  Isc-Mir-124  Laf-Mir-124-P2-v1  Laf-Mir-124-P2-v2  Lan-Mir-124  Lch-Mir-124-P2  Lhy-Mir-124  Llo-Mir-124  Loc-Mir-124-P2-v1  Loc-Mir-124-P2-v2  Mal-Mir-124-P2a-v1  Mal-Mir-124-P2a-v2  Mdo-Mir-124-P2-v1  Mdo-Mir-124-P2-v2  Mgi-Mir-124  Mml-Mir-124-P2-v1  Mml-Mir-124-P2-v2  Mmr-Mir-124-P2-v1  Mmr-Mir-124-P2-v2  Mmu-Mir-124-P2-v1  Mmu-Mir-124-P2-v2  Mom-Mir-124  Mun-Mir-124-P2-v1  Mun-Mir-124-P2-v2  Neu-Mir-124-P2-v1  Neu-Mir-124-P2-v2  Npo-Mir-124  Obi-Mir-124  Ocu-Mir-124-P2-v1  Ocu-Mir-124-P2-v2  Ofu-Mir-124  Ovu-Mir-124  Pab-Mir-124-P2-v1  Pab-Mir-124-P2-v2  Pau-Mir-124  Pbv-Mir-124-P2-v1  Pbv-Mir-124-P2-v2  Pdu-Mir-124  Pfl-Mir-124  Pma-Mir-124-o2  Pmi-Mir-124  Pve-Mir-124  Rno-Mir-124-P2-v1  Rno-Mir-124-P2-v2  Sha-Mir-124-P2-v1  Sha-Mir-124-P2-v2  Sko-Mir-124  Sma-Mir-124  Sne-Mir-124  Snu-Mir-124  Spt-Mir-124-P2  Spu-Mir-124  Sro-Mir-124  Sto-Mir-124-P2-v1  Sto-Mir-124-P2-v2  Tca-Mir-124  Tgu-Mir-124-P2-v1  Tgu-Mir-124-P2-v2  Tni-Mir-124-P2a-v1  Tni-Mir-124-P2a-v2  Tni-Mir-124-P2b-v1  Tni-Mir-124-P2b-v2  War-Mir-124  Xbo-Mir-124  Xla-Mir-124-P2c-v1  Xla-Mir-124-P2c-v2  Xla-Mir-124-P2d-v1  Xla-Mir-124-P2d-v2  Xtr-Mir-124-P2-v1  Xtr-Mir-124-P2-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017708742.1: 1926509-1926568 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-124-P2-v2)		 Mir-124-P2-v1 NW_017708742.1: 1926508-1926568 [-] UCSC
Mir-124-P2-v2 NW_017708742.1: 1926509-1926568 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GAACAAAGGCGGCCCCGCGGCCCCUCUCUGCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAACGGGGCCGCCUCGCGGCGAGGGCCGG
Get precursor sequence
Structure
        10         20         30        40        50          
GAACAAAGGCGGCCCCG-       UC  -| C        A   GA        UAAAUG 
                  CGGCCCC  UC UG GUGUUCAC GCG  CCUUGAUU      \
                  GCCGGGG  AG AC CGUAAGUG CGC  GGAAUUAA      U
GGCCGGGAGCGGCGCUCC       CA  A^ -        G   AC        CAUACC 
.       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-124-P2-v2_5p*
mirBase accessionMIMAT0038125
Sequence 
0- CGUGUUCACAGCGGACCUUGAUU -23
Get sequence
Mature sequence

Ami-Mir-124-P2-v2_3p
mirBase accessionMIMAT0038126
Sequence 
38- UUAAGGCACGCGGUGAAUGCCA -60
Get sequence