Mir-124-o2

MirGeneDB ID

Pma-Mir-124-o2

Family name

MIR-124 (all species)

Seed

AAGGCAC

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Mir-124-o1 Pma-Mir-124-o3

Orthologues

Aae-Mir-124 Aca-Mir-124-P2-v1 Aca-Mir-124-P2-v2 Ami-Mir-124-P2-v1 Ami-Mir-124-P2-v2 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bla-Mir-124 Bta-Mir-124-P2-v1 Bta-Mir-124-P2-v2 Cel-Mir-124 Cfa-Mir-124-P2-v1 Cfa-Mir-124-P2-v2 Cmi-Mir-124-P2-v1 Cmi-Mir-124-P2-v2 Cpi-Mir-124-P2-v1 Cpi-Mir-124-P2-v2 Cpo-Mir-124-P2-v1 Cpo-Mir-124-P2-v2 Cte-Mir-124 Dan-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dno-Mir-124-P2-v1 Dno-Mir-124-P2-v2 Dpu-Mir-124 Dre-Mir-124-P2a-v1 Dre-Mir-124-P2a-v2 Dsi-Mir-124 Dya-Mir-124 Esc-Mir-124 Ete-Mir-124-P2-v1 Ete-Mir-124-P2-v2 Gga-Mir-124-P2-v1 Gga-Mir-124-P2-v2 Gja-Mir-124-P2-v1 Gja-Mir-124-P2-v2 Hme-Mir-124 Hsa-Mir-124-P2-v1 Hsa-Mir-124-P2-v2 Isc-Mir-124 Lan-Mir-124 Lch-Mir-124-P2 Loc-Mir-124-P2-v1 Loc-Mir-124-P2-v2 Mal-Mir-124-P2a-v1 Mal-Mir-124-P2a-v2 Mdo-Mir-124-P2-v1 Mdo-Mir-124-P2-v2 Mml-Mir-124-P2-v1 Mml-Mir-124-P2-v2 Mmu-Mir-124-P2-v1 Mmu-Mir-124-P2-v2 Mun-Mir-124-P2-v1 Mun-Mir-124-P2-v2 Npo-Mir-124 Obi-Mir-124 Ocu-Mir-124-P2-v1 Ocu-Mir-124-P2-v2 Ovu-Mir-124 Pbv-Mir-124-P2-v1 Pbv-Mir-124-P2-v2 Pfl-Mir-124 Pmi-Mir-124 Rno-Mir-124-P2-v1 Rno-Mir-124-P2-v2 Sha-Mir-124-P2-v1 Sha-Mir-124-P2-v2 Sko-Mir-124 Spt-Mir-124-P2 Spu-Mir-124 Sto-Mir-124-P2-v1 Sto-Mir-124-P2-v2 Tca-Mir-124 Tgu-Mir-124-P2-v1 Tgu-Mir-124-P2-v2 Tni-Mir-124-P2a-v1 Tni-Mir-124-P2a-v2 Tni-Mir-124-P2b-v1 Tni-Mir-124-P2b-v2 Xbo-Mir-124 Xla-Mir-124-P2c-v1 Xla-Mir-124-P2c-v2 Xla-Mir-124-P2d-v1 Xla-Mir-124-P2d-v2 Xtr-Mir-124-P2-v1 Xtr-Mir-124-P2-v2

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

PIZI01000017.1: 1565775-1565833 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACUCUCCACGCUCCUGCCCCCCACUCUCCGUGUUCACGGCGGACCUUGAUUUAAUGACAAACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGGCGGCUCAUGUACCACAAACAAAC

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Structure

        10          20        30        40        50         
CCACUCUCCACGCUCCU--|  C   A    CC        G   GA       UUAAUG 
                   GCC CCC CUCU  GUGUUCAC GCG  CCUUGAU      \
                   CGG GGG GAGA  CGUAAGUG CGC  GGAAUUA      A
CAAACAAACACCAUGUACU^  C   A    AC        G   AC       ACAAAC 
       110       100        90        80        70        60

Deep sequencing

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Comment

Not in assembly but in trace archive.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-124-o2_5p*

mirBase accession

None

Sequence

0- CGUGUUCACGGCGGACCUUGAU -22

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Mature sequence

Pma-Mir-124-o2_3p

mirBase accession

None

Sequence

37- UAAGGCACGCGGUGAAUGCCAA -59

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