Mir-124-P2-v2

MirGeneDB ID

Eca-Mir-124-P2-v2

Family name

MIR-124 (all species)

Seed

UAAGGCA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-124-1

Paralogues

Eca-Mir-124-P1-v1 Eca-Mir-124-P1-v2 Eca-Mir-124-P2-v1 Eca-Mir-124-P3-v1 Eca-Mir-124-P3-v2

Orthologues

Aae-Mir-124 Aca-Mir-124-P2-v1 Aca-Mir-124-P2-v2 Aga-Mir-124 Agr-Mir-124 Ami-Mir-124-P2-v1 Ami-Mir-124-P2-v2 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Bta-Mir-124-P2-v1 Bta-Mir-124-P2-v2 Cel-Mir-124 Cfa-Mir-124-P2-v1 Cfa-Mir-124-P2-v2 Cja-Mir-124-P2-v1 Cja-Mir-124-P2-v2 Cmi-Mir-124-P2-v1 Cmi-Mir-124-P2-v2 Cpi-Mir-124-P2-v1 Cpi-Mir-124-P2-v2 Cpo-Mir-124-P2-v1 Cpo-Mir-124-P2-v2 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dno-Mir-124-P2-v1 Dno-Mir-124-P2-v2 Dpu-Mir-124 Dre-Mir-124-P2a-v1 Dre-Mir-124-P2a-v2 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Esc-Mir-124 Ete-Mir-124-P2-v1 Ete-Mir-124-P2-v2 Gga-Mir-124-P2-v1 Gga-Mir-124-P2-v2 Gja-Mir-124-P2-v1 Gja-Mir-124-P2-v2 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Hsa-Mir-124-P2-v1 Hsa-Mir-124-P2-v2 Isc-Mir-124 Laf-Mir-124-P2-v1 Laf-Mir-124-P2-v2 Lan-Mir-124 Lch-Mir-124-P2 Lhy-Mir-124 Llo-Mir-124 Loc-Mir-124-P2-v1 Loc-Mir-124-P2-v2 Mal-Mir-124-P2a-v1 Mal-Mir-124-P2a-v2 Mdo-Mir-124-P2-v1 Mdo-Mir-124-P2-v2 Mgi-Mir-124 Mml-Mir-124-P2-v1 Mml-Mir-124-P2-v2 Mmr-Mir-124-P2-v1 Mmr-Mir-124-P2-v2 Mmu-Mir-124-P2-v1 Mmu-Mir-124-P2-v2 Mom-Mir-124 Mun-Mir-124-P2-v1 Mun-Mir-124-P2-v2 Neu-Mir-124-P2-v1 Neu-Mir-124-P2-v2 Npo-Mir-124 Obi-Mir-124 Ocu-Mir-124-P2-v1 Ocu-Mir-124-P2-v2 Ofu-Mir-124 Ovu-Mir-124 Pab-Mir-124-P2-v1 Pab-Mir-124-P2-v2 Pau-Mir-124 Pbv-Mir-124-P2-v1 Pbv-Mir-124-P2-v2 Pdu-Mir-124 Pfl-Mir-124 Pma-Mir-124-o2 Pmi-Mir-124 Pve-Mir-124 Rno-Mir-124-P2-v1 Rno-Mir-124-P2-v2 Sha-Mir-124-P2-v1 Sha-Mir-124-P2-v2 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spt-Mir-124-P2 Spu-Mir-124 Sro-Mir-124 Sto-Mir-124-P2-v1 Sto-Mir-124-P2-v2 Tca-Mir-124 Tgu-Mir-124-P2-v1 Tgu-Mir-124-P2-v2 Tni-Mir-124-P2a-v1 Tni-Mir-124-P2a-v2 Tni-Mir-124-P2b-v1 Tni-Mir-124-P2b-v2 War-Mir-124 Xbo-Mir-124 Xla-Mir-124-P2c-v1 Xla-Mir-124-P2c-v2 Xla-Mir-124-P2d-v1 Xla-Mir-124-P2d-v2 Xtr-Mir-124-P2-v1 Xtr-Mir-124-P2-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009149.1: 58293862-58293921 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-124-P2-v2)

Mir-124-P2-v1 CM009149.1: 58293861-58293921 [-] UCSC Ensembl
Mir-124-P2-v2 CM009149.1: 58293862-58293921 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCCUUCCUCAGGAGAAAGGCCUCUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAAUGGGGCUGGCUGAGCACCGUCGGUCC

Get precursor sequence

Structure

        10         20        30        40        50          
UUCCUUCCUCAGGAGAAA-|     UC   CC        A   GA        UAAAUG 
                   GGCCUC  UCU  GUGUUCAC GCG  CCUUGAUU      \
                   UCGGGG  AGA  CGUAAGUG CGC  GGAAUUAA      U
CCUGGCUGCCACGAGUCGG^     UA   AC        G   AC        CAUACC 
.       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-124-P2-v2_5p*

mirBase accession

None

Sequence

0- CGUGUUCACAGCGGACCUUGAUU -23

Get sequence

Mature sequence

Eca-Mir-124-P2-v2_3p

mirBase accession

MIMAT0012906

Sequence

38- UUAAGGCACGCGGUGAAUGCCA -60

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