Mir-124-P2d-v1

MirGeneDB ID

Xla-Mir-124-P2d-v1

Family name

MIR-124 (all species)

Seed

AAGGCAC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-124-1

Paralogues

Xla-Mir-124-P1c-v1 Xla-Mir-124-P1c-v2 Xla-Mir-124-P1d-v1 Xla-Mir-124-P1d-v2 Xla-Mir-124-P2c-v1 Xla-Mir-124-P2c-v2 Xla-Mir-124-P2d-v2 Xla-Mir-124-P3c-v1 Xla-Mir-124-P3c-v2 Xla-Mir-124-P3d-v1 Xla-Mir-124-P3d-v2

Orthologues

Aae-Mir-124 Aca-Mir-124-P2-v1 Aca-Mir-124-P2-v2 Aga-Mir-124 Agr-Mir-124 Ami-Mir-124-P2-v1 Ami-Mir-124-P2-v2 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Bta-Mir-124-P2-v1 Bta-Mir-124-P2-v2 Cel-Mir-124 Cfa-Mir-124-P2-v1 Cfa-Mir-124-P2-v2 Cja-Mir-124-P2-v1 Cja-Mir-124-P2-v2 Cmi-Mir-124-P2-v1 Cmi-Mir-124-P2-v2 Cpi-Mir-124-P2-v1 Cpi-Mir-124-P2-v2 Cpo-Mir-124-P2-v1 Cpo-Mir-124-P2-v2 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dno-Mir-124-P2-v1 Dno-Mir-124-P2-v2 Dpu-Mir-124 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Eca-Mir-124-P2-v1 Eca-Mir-124-P2-v2 Esc-Mir-124 Ete-Mir-124-P2-v1 Ete-Mir-124-P2-v2 Gga-Mir-124-P2-v1 Gga-Mir-124-P2-v2 Gja-Mir-124-P2-v1 Gja-Mir-124-P2-v2 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Hsa-Mir-124-P2-v1 Hsa-Mir-124-P2-v2 Isc-Mir-124 Laf-Mir-124-P2-v1 Laf-Mir-124-P2-v2 Lan-Mir-124 Lch-Mir-124-P2 Lhy-Mir-124 Llo-Mir-124 Loc-Mir-124-P2-v1 Loc-Mir-124-P2-v2 Mdo-Mir-124-P2-v1 Mdo-Mir-124-P2-v2 Mgi-Mir-124 Mml-Mir-124-P2-v1 Mml-Mir-124-P2-v2 Mmr-Mir-124-P2-v1 Mmr-Mir-124-P2-v2 Mmu-Mir-124-P2-v1 Mmu-Mir-124-P2-v2 Mom-Mir-124 Mun-Mir-124-P2-v1 Mun-Mir-124-P2-v2 Neu-Mir-124-P2-v1 Neu-Mir-124-P2-v2 Npo-Mir-124 Obi-Mir-124 Ocu-Mir-124-P2-v1 Ocu-Mir-124-P2-v2 Ofu-Mir-124 Ovu-Mir-124 Pab-Mir-124-P2-v1 Pab-Mir-124-P2-v2 Pau-Mir-124 Pbv-Mir-124-P2-v1 Pbv-Mir-124-P2-v2 Pdu-Mir-124 Pfl-Mir-124 Pma-Mir-124-o2 Pmi-Mir-124 Pve-Mir-124 Rno-Mir-124-P2-v1 Rno-Mir-124-P2-v2 Sha-Mir-124-P2-v1 Sha-Mir-124-P2-v2 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spt-Mir-124-P2 Spu-Mir-124 Sro-Mir-124 Sto-Mir-124-P2-v1 Sto-Mir-124-P2-v2 Tca-Mir-124 Tgu-Mir-124-P2-v1 Tgu-Mir-124-P2-v2 War-Mir-124 Xbo-Mir-124 Xtr-Mir-124-P2-v1 Xtr-Mir-124-P2-v2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030733.1: 131342483-131342543 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-124-P2d-v1)

Mir-124-P2d-v1 NC_030733.1: 131342483-131342543 [+] UCSC Ensembl
Mir-124-P2d-v2 NC_030733.1: 131342483-131342542 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCACUCUUGACAUUAGAGGCCCCUUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGGGCUGAGAAGCAGCCAGUGAGGAU

Get precursor sequence

Structure

        10           20        30        40        50          
GCACUCUUGACAUUAGA---|      U    CC        A   GA       UUAAAUG 
                    GGCCCCU CUCU  GUGUUCAC GCG  CCUUGAU       \
                    UCGGGGA GAGA  CGUAAGUG CGC  GGAAUUA       U
UAGGAGUGACCGACGAAGAG^      -    AC        G   AC       ACAUACC 
 .       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Star sequence

Xla-Mir-124-P2d-v1_5p*

mirBase accession

MIMAT0046430

Sequence

0- CGUGUUCACAGCGGACCUUGAU -22

Get sequence

Mature sequence

Xla-Mir-124-P2d-v1_3p

mirBase accession

MIMAT0046429

Sequence

39- UAAGGCACGCGGUGAAUGCCAA -61

Get sequence