MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-124-P3c-v1

Family name MIR-124 (all species)
Seed AAGGCAC
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-124-P1c-v1  Xla-Mir-124-P1c-v2  Xla-Mir-124-P1d-v1  Xla-Mir-124-P1d-v2  Xla-Mir-124-P2c-v1  Xla-Mir-124-P2c-v2  Xla-Mir-124-P2d-v1  Xla-Mir-124-P2d-v2  Xla-Mir-124-P3c-v2  Xla-Mir-124-P3d-v1  Xla-Mir-124-P3d-v2 
Orthologues Aae-Mir-124  Aca-Mir-124-P3-v1  Aca-Mir-124-P3-v2  Ami-Mir-124-P3-v1  Ami-Mir-124-P3-v2  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bla-Mir-124  Bta-Mir-124-P3-v1  Bta-Mir-124-P3-v2  Cel-Mir-124  Cfa-Mir-124-P3-v1  Cfa-Mir-124-P3-v2  Cli-Mir-124-P3-v1  Cli-Mir-124-P3-v2  Cmi-Mir-124-P3-v1  Cmi-Mir-124-P3-v2  Cpi-Mir-124-P3-v1  Cpi-Mir-124-P3-v2  Cpo-Mir-124-P3-v1  Cpo-Mir-124-P3-v2  Cte-Mir-124  Dan-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dno-Mir-124-P3-v1  Dno-Mir-124-P3-v2  Dpu-Mir-124  Dsi-Mir-124  Dya-Mir-124  Esc-Mir-124  Gga-Mir-124-P3-v1  Gga-Mir-124-P3-v2  Gja-Mir-124-P3-v1  Gja-Mir-124-P3-v2  Hme-Mir-124  Hsa-Mir-124-P3-v1  Hsa-Mir-124-P3-v2  Isc-Mir-124  Lan-Mir-124  Lch-Mir-124-P3  Loc-Mir-124-P3-v1  Loc-Mir-124-P3-v2  Mdo-Mir-124-P3-v1  Mdo-Mir-124-P3-v2  Mml-Mir-124-P3-v1  Mml-Mir-124-P3-v2  Mmu-Mir-124-P3-v1  Mmu-Mir-124-P3-v2  Mun-Mir-124-P3-v1  Mun-Mir-124-P3-v2  Npo-Mir-124  Oan-Mir-124-P3-v1  Oan-Mir-124-P3-v2  Obi-Mir-124  Ocu-Mir-124-P3-v1  Ocu-Mir-124-P3-v2  Ovu-Mir-124  Pbv-Mir-124-P3-v1  Pbv-Mir-124-P3-v2  Pfl-Mir-124  Pma-Mir-124-o3  Pmi-Mir-124  Rno-Mir-124-P3-v1  Rno-Mir-124-P3-v2  Sha-Mir-124-P3-v1  Sha-Mir-124-P3-v2  Sko-Mir-124  Spu-Mir-124  Sto-Mir-124-P3-v1  Sto-Mir-124-P3-v2  Tca-Mir-124  Tgu-Mir-124-P3-v1  Tgu-Mir-124-P3-v2  Xbo-Mir-124  Xtr-Mir-124-P3-v1  Xtr-Mir-124-P3-v2 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)
NC_030740.1: 17160989-17161048 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCCACCAGCCACAUGGAGCCCCCCUCUGCGUGUUCACAGUGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGGGCUUUAUUGCUUCAGCUGAAGGA
Get precursor sequence
Structure
        10          20         30        40        50         
CCCCCACCAGCCACAUG--       C   -| C        A   GA       UUAAUG 
                   GAGCCCC CUC UG GUGUUCAC GUG  CCUUGAU      U
                   UUCGGGG GAG AC CGUAAGUG CGC  GGAAUUA      C
AGGAAGUCGACUUCGUUAU       A   A^ -        G   AC       ACAUAC 
.       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-124-P3c-v1_5p*

mirBase accessionNone
Sequence
0- CGUGUUCACAGUGGACCUUGAU -22
Get sequence
Mature sequence

Xla-Mir-124-P3c-v1_3p

mirBase accessionNone
Sequence
38- UAAGGCACGCGGUGAAUGCCAA -60
Get sequence