Mir-124-P3-v1

MirGeneDB ID

Rno-Mir-124-P3-v1

Family name

MIR-124 (all species)

Seed

AAGGCAC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-124-3

Paralogues

Rno-Mir-124-P1-v1 Rno-Mir-124-P1-v2 Rno-Mir-124-P2-v1 Rno-Mir-124-P2-v2 Rno-Mir-124-P3-v2

Orthologues

Aae-Mir-124 Aca-Mir-124-P3-v1 Aca-Mir-124-P3-v2 Aga-Mir-124 Agr-Mir-124 Ami-Mir-124-P3-v1 Ami-Mir-124-P3-v2 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Bta-Mir-124-P3-v1 Bta-Mir-124-P3-v2 Cel-Mir-124 Cfa-Mir-124-P3-v1 Cfa-Mir-124-P3-v2 Cja-Mir-124-P3-v1 Cja-Mir-124-P3-v2 Cli-Mir-124-P3-v1 Cli-Mir-124-P3-v2 Cmi-Mir-124-P3-v1 Cmi-Mir-124-P3-v2 Cpi-Mir-124-P3-v1 Cpi-Mir-124-P3-v2 Cpo-Mir-124-P3-v1 Cpo-Mir-124-P3-v2 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dno-Mir-124-P3-v1 Dno-Mir-124-P3-v2 Dpu-Mir-124 Dre-Mir-124-P3a-v1 Dre-Mir-124-P3a-v2 Dre-Mir-124-P3b-v1 Dre-Mir-124-P3b-v2 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Eca-Mir-124-P3-v1 Eca-Mir-124-P3-v2 Esc-Mir-124 Gga-Mir-124-P3-v1 Gga-Mir-124-P3-v2 Gja-Mir-124-P3-v1 Gja-Mir-124-P3-v2 Gmo-Mir-124-P3a-v1 Gmo-Mir-124-P3a-v2 Gmo-Mir-124-P3b-v1 Gmo-Mir-124-P3b-v2 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Hsa-Mir-124-P3-v1 Hsa-Mir-124-P3-v2 Isc-Mir-124 Laf-Mir-124-P3-v1 Laf-Mir-124-P3-v2 Lan-Mir-124 Lch-Mir-124-P3 Lhy-Mir-124 Llo-Mir-124 Loc-Mir-124-P3-v1 Loc-Mir-124-P3-v2 Mal-Mir-124-P3a-v1 Mal-Mir-124-P3a-v2 Mal-Mir-124-P3b-v1 Mal-Mir-124-P3b-v2 Mdo-Mir-124-P3-v1 Mdo-Mir-124-P3-v2 Mgi-Mir-124 Mml-Mir-124-P3-v1 Mml-Mir-124-P3-v2 Mmr-Mir-124-P3-v1 Mmr-Mir-124-P3-v2 Mmu-Mir-124-P3-v1 Mmu-Mir-124-P3-v2 Mom-Mir-124 Mun-Mir-124-P3-v1 Mun-Mir-124-P3-v2 Neu-Mir-124-P3-v1 Neu-Mir-124-P3-v2 Npo-Mir-124 Oan-Mir-124-P3-v1 Oan-Mir-124-P3-v2 Obi-Mir-124 Ocu-Mir-124-P3-v1 Ocu-Mir-124-P3-v2 Ofu-Mir-124 Ovu-Mir-124 Pab-Mir-124-P3-v1 Pab-Mir-124-P3-v2 Pau-Mir-124 Pbv-Mir-124-P3-v1 Pbv-Mir-124-P3-v2 Pdu-Mir-124 Pfl-Mir-124 Pma-Mir-124-o3 Pmi-Mir-124 Pve-Mir-124 Sha-Mir-124-P3-v1 Sha-Mir-124-P3-v2 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spt-Mir-124-P3e Spt-Mir-124-P3f Spu-Mir-124 Sro-Mir-124 Sto-Mir-124-P3-v1 Sto-Mir-124-P3-v2 Tca-Mir-124 Tgu-Mir-124-P3-v1 Tgu-Mir-124-P3-v2 War-Mir-124 Xbo-Mir-124 Xla-Mir-124-P3c-v1 Xla-Mir-124-P3c-v2 Xla-Mir-124-P3d-v1 Xla-Mir-124-P3d-v2 Xtr-Mir-124-P3-v1 Xtr-Mir-124-P3-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr3: 176406219-176406278 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-124-P3-v1)

Mir-124-P3-v1 chr3: 176406219-176406278 [+] UCSC Ensembl
Mir-124-P3-v2 chr3: 176406219-176406277 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGCCCGCCGCAGCCCUGAGGGCCCCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGCGCCUCCGCCGCUCCUUUCUCAUG

Get precursor sequence

Structure

        10         20          30        40        50         
CCGCCCGCCGCAGCCCU-    -   C   -| C        A   GA       UUAAUG 
                  GAGG GCC CUC UG GUGUUCAC GCG  CCUUGAU      U
                  CUCC CGG GAG AC CGUAAGUG CGC  GGAAUUA      C
GUACUCUUUCCUCGCCGC    G   A   A^ -        G   AC       ACAUAU 
.       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-124-P3-v1_5p*

mirBase accession

MIMAT0004728

Sequence

0- CGUGUUCACAGCGGACCUUGAU -22

Get sequence

Proposed targets

microrna.org: MIMAT0004728
TargetScanVert: rno-miR-124-5p
miRDB: MIMAT0004728

Mature sequence

Rno-Mir-124-P3-v1_3p

mirBase accession

MIMAT0000828

Sequence

38- UAAGGCACGCGGUGAAUGCCAA -60

Get sequence

Proposed targets

microrna.org: MIMAT0000828
TargetScanVert: rno-miR-124-3p
miRDB: MIMAT0000828