Mir-124-P3-v2

MirGeneDB ID

Gga-Mir-124-P3-v2

Family name

MIR-124 (all species)

Seed

UAAGGCA

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-124a-2

Paralogues

Gga-Mir-124-P1-v1 Gga-Mir-124-P1-v2 Gga-Mir-124-P2-v1 Gga-Mir-124-P2-v2 Gga-Mir-124-P3-v1 Gga-Mir-124-P4-v1 Gga-Mir-124-P4-v2

Orthologues

Aae-Mir-124 Aca-Mir-124-P3-v1 Aca-Mir-124-P3-v2 Aga-Mir-124 Agr-Mir-124 Ami-Mir-124-P3-v1 Ami-Mir-124-P3-v2 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Bta-Mir-124-P3-v1 Bta-Mir-124-P3-v2 Cel-Mir-124 Cfa-Mir-124-P3-v1 Cfa-Mir-124-P3-v2 Cja-Mir-124-P3-v1 Cja-Mir-124-P3-v2 Cli-Mir-124-P3-v1 Cli-Mir-124-P3-v2 Cmi-Mir-124-P3-v1 Cmi-Mir-124-P3-v2 Cpi-Mir-124-P3-v1 Cpi-Mir-124-P3-v2 Cpo-Mir-124-P3-v1 Cpo-Mir-124-P3-v2 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dno-Mir-124-P3-v1 Dno-Mir-124-P3-v2 Dpu-Mir-124 Dre-Mir-124-P3a-v1 Dre-Mir-124-P3a-v2 Dre-Mir-124-P3b-v1 Dre-Mir-124-P3b-v2 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Eca-Mir-124-P3-v1 Eca-Mir-124-P3-v2 Esc-Mir-124 Gja-Mir-124-P3-v1 Gja-Mir-124-P3-v2 Gmo-Mir-124-P3a-v1 Gmo-Mir-124-P3a-v2 Gmo-Mir-124-P3b-v1 Gmo-Mir-124-P3b-v2 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Hsa-Mir-124-P3-v1 Hsa-Mir-124-P3-v2 Isc-Mir-124 Laf-Mir-124-P3-v1 Laf-Mir-124-P3-v2 Lan-Mir-124 Lch-Mir-124-P3 Lhy-Mir-124 Llo-Mir-124 Loc-Mir-124-P3-v1 Loc-Mir-124-P3-v2 Mal-Mir-124-P3a-v1 Mal-Mir-124-P3a-v2 Mal-Mir-124-P3b-v1 Mal-Mir-124-P3b-v2 Mdo-Mir-124-P3-v1 Mdo-Mir-124-P3-v2 Mgi-Mir-124 Mml-Mir-124-P3-v1 Mml-Mir-124-P3-v2 Mmr-Mir-124-P3-v1 Mmr-Mir-124-P3-v2 Mmu-Mir-124-P3-v1 Mmu-Mir-124-P3-v2 Mom-Mir-124 Mun-Mir-124-P3-v1 Mun-Mir-124-P3-v2 Neu-Mir-124-P3-v1 Neu-Mir-124-P3-v2 Npo-Mir-124 Oan-Mir-124-P3-v1 Oan-Mir-124-P3-v2 Obi-Mir-124 Ocu-Mir-124-P3-v1 Ocu-Mir-124-P3-v2 Ofu-Mir-124 Ovu-Mir-124 Pab-Mir-124-P3-v1 Pab-Mir-124-P3-v2 Pau-Mir-124 Pbv-Mir-124-P3-v1 Pbv-Mir-124-P3-v2 Pdu-Mir-124 Pfl-Mir-124 Pma-Mir-124-o3 Pmi-Mir-124 Pve-Mir-124 Rno-Mir-124-P3-v1 Rno-Mir-124-P3-v2 Sha-Mir-124-P3-v1 Sha-Mir-124-P3-v2 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spt-Mir-124-P3e Spt-Mir-124-P3f Spu-Mir-124 Sro-Mir-124 Sto-Mir-124-P3-v1 Sto-Mir-124-P3-v2 Tca-Mir-124 Tgu-Mir-124-P3-v1 Tgu-Mir-124-P3-v2 War-Mir-124 Xbo-Mir-124 Xla-Mir-124-P3c-v1 Xla-Mir-124-P3c-v2 Xla-Mir-124-P3d-v1 Xla-Mir-124-P3d-v2 Xtr-Mir-124-P3-v1 Xtr-Mir-124-P3-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

20: 8692494-8692552 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-124-P3-v2)

Mir-124-P3-v1 20: 8692494-8692553 [+] UCSC Ensembl
Mir-124-P3-v2 20: 8692494-8692552 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGAGCCGGGCCAGCCCGAGCCUCUCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAGCCUCACAGCUUCAUUUUCAUG

Get precursor sequence

Structure

        10         20         30        40        50         
CCGAGCCGGGCCAGCCCGA-  CU     -| C        A   GA        UAAUG 
                    GC  CUCUC UG GUGUUCAC GCG  CCUUGAUU     U
                    CG  GAGAG AC CGUAAGUG CGC  GGAAUUAA     C
GUACUUUUACUUCGACACUC  AG     A^ -        G   AC        CAUAC 
       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-124-P3-v2_5p*

mirBase accession

MIMAT0026511

Sequence

0- CGUGUUCACAGCGGACCUUGAUU -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-124a-5p
miRDB: MIMAT0026511

Mature sequence

Gga-Mir-124-P3-v2_3p

mirBase accession

MIMAT0001128

Sequence

37- UUAAGGCACGCGGUGAAUGCCA -59

Get sequence

Proposed targets

TargetScanVert: gga-miR-124a-3p
miRDB: MIMAT0001128