Mir-124-P3a-v1

MirGeneDB ID

Gmo-Mir-124-P3a-v1

Family name

MIR-124 (all species)

Seed

AAGGCAC

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-124-3

Paralogues

Gmo-Mir-124-P1a-v1 Gmo-Mir-124-P1a-v2 Gmo-Mir-124-P1b-v1 Gmo-Mir-124-P1b-v2 Gmo-Mir-124-P3a-v2 Gmo-Mir-124-P3b-v1 Gmo-Mir-124-P3b-v2 Gmo-Mir-124-P4-v1 Gmo-Mir-124-P4-v2

Orthologues

Aae-Mir-124 Aca-Mir-124-P3-v1 Aca-Mir-124-P3-v2 Aga-Mir-124 Agr-Mir-124 Ami-Mir-124-P3-v1 Ami-Mir-124-P3-v2 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Bta-Mir-124-P3-v1 Bta-Mir-124-P3-v2 Cel-Mir-124 Cfa-Mir-124-P3-v1 Cfa-Mir-124-P3-v2 Cja-Mir-124-P3-v1 Cja-Mir-124-P3-v2 Cli-Mir-124-P3-v1 Cli-Mir-124-P3-v2 Cmi-Mir-124-P3-v1 Cmi-Mir-124-P3-v2 Cpi-Mir-124-P3-v1 Cpi-Mir-124-P3-v2 Cpo-Mir-124-P3-v1 Cpo-Mir-124-P3-v2 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dno-Mir-124-P3-v1 Dno-Mir-124-P3-v2 Dpu-Mir-124 Dre-Mir-124-P3a-v1 Dre-Mir-124-P3a-v2 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Eca-Mir-124-P3-v1 Eca-Mir-124-P3-v2 Esc-Mir-124 Gga-Mir-124-P3-v1 Gga-Mir-124-P3-v2 Gja-Mir-124-P3-v1 Gja-Mir-124-P3-v2 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Hsa-Mir-124-P3-v1 Hsa-Mir-124-P3-v2 Isc-Mir-124 Laf-Mir-124-P3-v1 Laf-Mir-124-P3-v2 Lan-Mir-124 Lch-Mir-124-P3 Lhy-Mir-124 Llo-Mir-124 Loc-Mir-124-P3-v1 Loc-Mir-124-P3-v2 Mal-Mir-124-P3a-v1 Mal-Mir-124-P3a-v2 Mdo-Mir-124-P3-v1 Mdo-Mir-124-P3-v2 Mgi-Mir-124 Mml-Mir-124-P3-v1 Mml-Mir-124-P3-v2 Mmr-Mir-124-P3-v1 Mmr-Mir-124-P3-v2 Mmu-Mir-124-P3-v1 Mmu-Mir-124-P3-v2 Mom-Mir-124 Mun-Mir-124-P3-v1 Mun-Mir-124-P3-v2 Neu-Mir-124-P3-v1 Neu-Mir-124-P3-v2 Npo-Mir-124 Oan-Mir-124-P3-v1 Oan-Mir-124-P3-v2 Obi-Mir-124 Ocu-Mir-124-P3-v1 Ocu-Mir-124-P3-v2 Ofu-Mir-124 Ovu-Mir-124 Pab-Mir-124-P3-v1 Pab-Mir-124-P3-v2 Pau-Mir-124 Pbv-Mir-124-P3-v1 Pbv-Mir-124-P3-v2 Pdu-Mir-124 Pfl-Mir-124 Pma-Mir-124-o3 Pmi-Mir-124 Pve-Mir-124 Rno-Mir-124-P3-v1 Rno-Mir-124-P3-v2 Sha-Mir-124-P3-v1 Sha-Mir-124-P3-v2 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spu-Mir-124 Sro-Mir-124 Sto-Mir-124-P3-v1 Sto-Mir-124-P3-v2 Tca-Mir-124 Tgu-Mir-124-P3-v1 Tgu-Mir-124-P3-v2 War-Mir-124 Xbo-Mir-124 Xtr-Mir-124-P3-v1 Xtr-Mir-124-P3-v2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

contig170278: 229-288 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-124-P3a-v1)

Mir-124-P3a-v1 contig170278: 229-288 [+] UCSC Ensembl
Mir-124-P3a-v2 contig170278: 229-287 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCGACGUCUUGACGAUGGGUUAUCGCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAAUCUACAGCAUCUCCAUGUAAAU

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Structure

        10           20         30        40        50         
GCGACGUCUUGACGAUG---|   A  G    - C        A   GA       UUAAUG 
                    GGUU UC CUCU G GUGUUCAC GCG  CCUUGAU      U
                    CUAA GG GAGA C CGUAAGUG CGC  GGAAUUA      C
UAAAUGUACCUCUACGACAU^   -  A    A -        G   AC       ACAUAC 
.       110       100         90         80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Star sequence

Gmo-Mir-124-P3a-v1_5p*

mirBase accession

MIMAT0044015

Sequence

0- CGUGUUCACAGCGGACCUUGAU -22

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Mature sequence

Gmo-Mir-124-P3a-v1_3p

mirBase accession

MIMAT0044016

Sequence

38- UAAGGCACGCGGUGAAUGCCAA -60

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