MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-124-P3b-v2

Family name MIR-124 (all species)
Seed UAAGGCA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-124-4
Paralogues Gmo-Mir-124-P1a-v1  Gmo-Mir-124-P1a-v2  Gmo-Mir-124-P1b-v1  Gmo-Mir-124-P1b-v2  Gmo-Mir-124-P3a-v1  Gmo-Mir-124-P3a-v2  Gmo-Mir-124-P3b-v1  Gmo-Mir-124-P4-v1  Gmo-Mir-124-P4-v2 
Orthologues Aae-Mir-124  Aca-Mir-124-P3-v1  Aca-Mir-124-P3-v2  Ami-Mir-124-P3-v1  Ami-Mir-124-P3-v2  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bla-Mir-124  Bta-Mir-124-P3-v1  Bta-Mir-124-P3-v2  Cel-Mir-124  Cfa-Mir-124-P3-v1  Cfa-Mir-124-P3-v2  Cli-Mir-124-P3-v1  Cli-Mir-124-P3-v2  Cmi-Mir-124-P3-v1  Cmi-Mir-124-P3-v2  Cpi-Mir-124-P3-v1  Cpi-Mir-124-P3-v2  Cpo-Mir-124-P3-v1  Cpo-Mir-124-P3-v2  Cte-Mir-124  Dan-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dno-Mir-124-P3-v1  Dno-Mir-124-P3-v2  Dpu-Mir-124  Dre-Mir-124-P3b-v1  Dre-Mir-124-P3b-v2  Dsi-Mir-124  Dya-Mir-124  Esc-Mir-124  Gga-Mir-124-P3-v1  Gga-Mir-124-P3-v2  Gja-Mir-124-P3-v1  Gja-Mir-124-P3-v2  Hme-Mir-124  Hsa-Mir-124-P3-v1  Hsa-Mir-124-P3-v2  Isc-Mir-124  Lan-Mir-124  Lch-Mir-124-P3  Loc-Mir-124-P3-v1  Loc-Mir-124-P3-v2  Mal-Mir-124-P3b-v1  Mal-Mir-124-P3b-v2  Mdo-Mir-124-P3-v1  Mdo-Mir-124-P3-v2  Mml-Mir-124-P3-v1  Mml-Mir-124-P3-v2  Mmu-Mir-124-P3-v1  Mmu-Mir-124-P3-v2  Mun-Mir-124-P3-v1  Mun-Mir-124-P3-v2  Npo-Mir-124  Oan-Mir-124-P3-v1  Oan-Mir-124-P3-v2  Obi-Mir-124  Ocu-Mir-124-P3-v1  Ocu-Mir-124-P3-v2  Ovu-Mir-124  Pbv-Mir-124-P3-v1  Pbv-Mir-124-P3-v2  Pfl-Mir-124  Pma-Mir-124-o3  Pmi-Mir-124  Rno-Mir-124-P3-v1  Rno-Mir-124-P3-v2  Sha-Mir-124-P3-v1  Sha-Mir-124-P3-v2  Sko-Mir-124  Spu-Mir-124  Sto-Mir-124-P3-v1  Sto-Mir-124-P3-v2  Tca-Mir-124  Tgu-Mir-124-P3-v1  Tgu-Mir-124-P3-v2  Xbo-Mir-124  Xtr-Mir-124-P3-v1  Xtr-Mir-124-P3-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_1609: 326970-327029 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-124-P3b-v2)
Mir-124-P3b-v1 GeneScaffold_1609: 326970-327030 [+] UCSC Ensembl
Mir-124-P3b-v2 GeneScaffold_1609: 326970-327029 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGAAUACAACGGAAGGGAUUGCCACUCCUUGUGUUCACAGCGGACCUUGAUUUAAUACCCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGGGUCCUCUGCGGCAUUGUCAACG
Get precursor sequence
Structure
        10        20         30         40        50          
UUGAAUACAACGGAAGGGAUU   A   -   -|       A   GA        UAAUAC 
                     GCC CUC CUU GUGUUCAC GCG  CCUUGAUU      \
                     UGG GAG GAA CGUAAGUG CGC  GGAAUUAA      C
GCAACUGUUACGGCGUCUCC-   G   A   C^       G   AC        CAUAAC 
.       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-124-P3b-v2_5p*

mirBase accessionNone
Sequence
0- UGUGUUCACAGCGGACCUUGAUU -23
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Mature sequence

Gmo-Mir-124-P3b-v2_3p

mirBase accessionMIMAT0044016
Sequence
38- UUAAGGCACGCGGUGAAUGCCA -60
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