Mir-124-P4-v1

MirGeneDB ID

Gga-Mir-124-P4-v1

Family name

MIR-124 (all species)

Seed

AAGGCAC

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-124b

Paralogues

Gga-Mir-124-P1-v1 Gga-Mir-124-P1-v2 Gga-Mir-124-P2-v1 Gga-Mir-124-P2-v2 Gga-Mir-124-P3-v1 Gga-Mir-124-P3-v2 Gga-Mir-124-P4-v2

Orthologues

Aae-Mir-124 Aca-Mir-124-P4-v1 Aca-Mir-124-P4-v2 Aga-Mir-124 Agr-Mir-124 Ami-Mir-124-P4-v1 Ami-Mir-124-P4-v2 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Cel-Mir-124 Cmi-Mir-124-P4 Cpi-Mir-124-P4-v1 Cpi-Mir-124-P4-v2 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dre-Mir-124-P4-v1 Dre-Mir-124-P4-v2 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Esc-Mir-124 Gja-Mir-124-P4-v1 Gja-Mir-124-P4-v2 Gmo-Mir-124-P4-v1 Gmo-Mir-124-P4-v2 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Isc-Mir-124 Lan-Mir-124 Lch-Mir-124-P4 Lhy-Mir-124 Llo-Mir-124 Loc-Mir-124-P4-v1 Loc-Mir-124-P4-v2 Mal-Mir-124-P4-v1 Mal-Mir-124-P4-v2 Mgi-Mir-124 Mom-Mir-124 Mun-Mir-124-P4-v1 Mun-Mir-124-P4-v2 Npo-Mir-124 Oan-Mir-124-P4-v1 Oan-Mir-124-P4-v2 Obi-Mir-124 Ofu-Mir-124 Ovu-Mir-124 Pau-Mir-124 Pbv-Mir-124-P4a Pbv-Mir-124-P4b-v1 Pbv-Mir-124-P4b-v2 Pcr-Mir-124-o4 Pdu-Mir-124 Pfl-Mir-124 Pmi-Mir-124 Pve-Mir-124 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spt-Mir-124-P4 Spu-Mir-124 Sro-Mir-124 Sto-Mir-124-P4-v1 Sto-Mir-124-P4-v2 Tca-Mir-124 Tni-Mir-124-P4-v1 Tni-Mir-124-P4-v2 War-Mir-124 Xbo-Mir-124

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

23: 2379323-2379381 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-124-P4-v1)

Mir-124-P4-v1 23: 2379323-2379381 [+] UCSC Ensembl
Mir-124-P4-v2 23: 2379323-2379380 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCGCUCCUCCAGCCAUCAGCCCCAGCGUUUUGUGUUCACUGCAGACCUUGAUUUAAUGUCACACGAUUAAGGCACGCAGUGAAUGCCAAAGUUUGGGGCAGCCUGGGCUGGGGGCUGCU

Get precursor sequence

Structure

        10          20        30        40        50         
GCGCUCCUCCAGCCAUCA--|      CG   U           AGA       UUAAUG 
                    GCCCCAG  UUU GUGUUCACUGC   CCUUGAU      \
                    CGGGGUU  AAA CGUAAGUGACG   GGAAUUA      U
UCGUCGGGGGUCGGGUCCGA^      UG   C           CAC       GCACAC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-124-P4-v1_5p* (predicted)

mirBase accession

None

Sequence

0- UGUGUUCACUGCAGACCUUGAU -22

Get sequence

Mature sequence

Gga-Mir-124-P4-v1_3p

mirBase accession

MIMAT0001174

Sequence

37- UAAGGCACGCAGUGAAUGCCAA -59

Get sequence

Proposed targets

TargetScanVert: gga-miR-124b
miRDB: MIMAT0001174