Mir-124-P4

MirGeneDB ID

Cmi-Mir-124-P4

Family name

MIR-124 (all species)

Seed

AAGGCAC

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-124-P1-v1 Cmi-Mir-124-P1-v2 Cmi-Mir-124-P2-v1 Cmi-Mir-124-P2-v2 Cmi-Mir-124-P3-v1 Cmi-Mir-124-P3-v2

Orthologues

Aae-Mir-124 Aca-Mir-124-P4-v1 Aca-Mir-124-P4-v2 Aga-Mir-124 Agr-Mir-124 Ami-Mir-124-P4-v1 Ami-Mir-124-P4-v2 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Cel-Mir-124 Cpi-Mir-124-P4-v1 Cpi-Mir-124-P4-v2 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dre-Mir-124-P4-v1 Dre-Mir-124-P4-v2 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Esc-Mir-124 Gga-Mir-124-P4-v1 Gga-Mir-124-P4-v2 Gja-Mir-124-P4-v1 Gja-Mir-124-P4-v2 Gmo-Mir-124-P4-v1 Gmo-Mir-124-P4-v2 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Isc-Mir-124 Lan-Mir-124 Lch-Mir-124-P4 Lhy-Mir-124 Llo-Mir-124 Loc-Mir-124-P4-v1 Loc-Mir-124-P4-v2 Mal-Mir-124-P4-v1 Mal-Mir-124-P4-v2 Mgi-Mir-124 Mom-Mir-124 Mun-Mir-124-P4-v1 Mun-Mir-124-P4-v2 Npo-Mir-124 Oan-Mir-124-P4-v1 Oan-Mir-124-P4-v2 Obi-Mir-124 Ofu-Mir-124 Ovu-Mir-124 Pau-Mir-124 Pbv-Mir-124-P4a Pbv-Mir-124-P4b-v1 Pbv-Mir-124-P4b-v2 Pcr-Mir-124-o4 Pdu-Mir-124 Pfl-Mir-124 Pmi-Mir-124 Pve-Mir-124 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spt-Mir-124-P4 Spu-Mir-124 Sro-Mir-124 Sto-Mir-124-P4-v1 Sto-Mir-124-P4-v2 Tca-Mir-124 Tni-Mir-124-P4-v1 Tni-Mir-124-P4-v2 War-Mir-124 Xbo-Mir-124

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635890.1: 3136753-3136811 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGUGGGGGGGAUGUUCGGUUCUCGCUCUCAGUGUUCAUGGCGGAUCUUGAUUUAAUGUGGUACAAUUAAGGCACACGGUGAAUGCUAAGGGAGGGGCCGGCGGACAGCCCAGGGCAGA

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Structure

        10           20        30        40          50         
GGGUGGGGGGGAUGUUC---|     CG    C         GG  GA--       UUAAUG 
                    GGUUCU  CUCU AGUGUUCAU  CG    UCUUGAU      \
                    CCGGGG  GGGA UCGUAAGUG  GC    GGAAUUA      U
AGACGGGACCCGACAGGCGG^     A-    A         --  ACAC       ACAUGG 
       110       100         90        80          70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-124-P4_5p* (predicted)

mirBase accession

None

Sequence

0- AGUGUUCAUGGCGGAUCUUGAU -22

Get sequence

Mature sequence

Cmi-Mir-124-P4_3p

mirBase accession

None

Sequence

37- UAAGGCACACGGUGAAUGCUAA -59

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