| MirGeneDB ID | Tni-Mir-727-P1-v2 |
|---|
| Family name |
MIR-727 (all species) |
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| Seed |
UUGAGGC |
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| Species |
Pufferfish (Tetraodon nigroviridis) |
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| MiRBase ID |
|
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| Paralogues |
Tni-Mir-727-P1-v1
Tni-Mir-727-P2-v1
Tni-Mir-727-P2-v2
|
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| Orthologues |
Dre-Mir-727-P1-v1
Dre-Mir-727-P1-v2
Gmo-Mir-727-P1
Spt-Mir-727
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Osteichthyes
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Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
6: 6650138-6650200 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUGAAGGAGGUCCAGCUGAGUGGCGCUUUCAGUCUUCAGUUCCUCCCAGCCCAUAAUGUUGUCAACACUGUGUUGAGGCGAGUUGAAGACUUAAAGCGCUGCUCAGAUUCGUGCCGCAGACCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUGAAGGAGGUCCAGCU--| UG C GU CU - C AUAAUGUU
GAG GCGCUUU AGUCUUCA UC CC CAGC C \
CUC CGCGAAA UCAGAAGU AG GG GUUG G G
CCCAGACGCCGUGCUUAGA^ GU U UG C- A U UCACAACU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Tni-Mir-727-P1-v2_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AGUCUUCAGUUCCUCCCAGCCC -22
Get sequence
|
|---|
| Mature sequence |
Tni-Mir-727-P1-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
41- GUUGAGGCGAGUUGAAGACUUA -63
Get sequence
|
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