MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-727-P2-v2

Family name MIR-727 (all species)
Seed UUGAGGC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-727-P1-v1  Tni-Mir-727-P1-v2  Tni-Mir-727-P2-v1 
Orthologues Gmo-Mir-727-P2  Mal-Mir-727-P2-v1  Mal-Mir-727-P2-v2  Spt-Mir-727 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Osteichthyes
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 15: 2764146-2764208 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAACACCCACUGUCCUGUAUGUCUUUUUCAGUCUUCAAUUCCUCCCAGCCCGUUACUAUGGAAACUGUGAGUUGAGGCGAGUUGAAGACUAAAAAUGCUGUACAGAUUCACGUAGCAGCUGG
Get precursor sequence
Structure
        10          20         30        40         50        60 
GCAACACCCACUGUCCU--    -| C     C            CU  -    CCGUUACUAU 
                   GUAU GU UUUUU AGUCUUCAAUUC  CC CAGC          \
                   CAUG CG AAAAA UCAGAAGUUGAG  GG GUUG          G
GGUCGACGAUGCACUUAGA    U^ U     -            C-  A    AGUGUCAAAG 
 120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-727-P2-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUCUUCAAUUCCUCCCAGCCC -22
Get sequence
Mature sequence

Tni-Mir-727-P2-v2_3p
mirBase accessionNone
Sequence 
41- GUUGAGGCGAGUUGAAGACUAA -63
Get sequence