Mir-210-P20

MirGeneDB ID

Xbo-Mir-210-P20

Family name

MIR-210 (all species)

Seed

UGUGCGU

Species

Xenoturbella (Xenoturbella bocki)

MiRBase ID

Paralogues

Xbo-Mir-210-P19

Orthologues

Aca-Mir-210 Agr-Mir-210 Ami-Mir-210 Bfl-Mir-210 Bla-Mir-210 Bta-Mir-210 Cfa-Mir-210 Cja-Mir-210 Cli-Mir-210 Cmi-Mir-210 Cpi-Mir-210 Cpo-Mir-210 Dgr-Mir-210 Dma-Mir-210 Dno-Mir-210 Dpu-Mir-210 Dre-Mir-210 Eba-Mir-210 Ebu-Mir-210 Eca-Mir-210 Egr-Mir-210 Ete-Mir-210 Gga-Mir-210 Gja-Mir-210 Gmo-Mir-210 Hsa-Mir-210 Isc-Mir-210 Lan-Mir-210 Lch-Mir-210 Lgi-Mir-210 Lhy-Mir-210 Llo-Mir-210 Loc-Mir-210 Mal-Mir-210 Mdo-Mir-210 Mgi-Mir-210 Mml-Mir-210 Mmr-Mir-210 Mmu-Mir-210 Mom-Mir-210 Mun-Mir-210 Neu-Mir-210 Npo-Mir-210 Oan-Mir-210 Ocu-Mir-210 Ofu-Mir-210 Pab-Mir-210 Pau-Mir-210 Pbv-Mir-210 Pca-Mir-210 Pma-Mir-210 Rno-Mir-210 Sha-Mir-210 Sko-Mir-210 Sma-Mir-210 Snu-Mir-210 Spt-Mir-210 Tgu-Mir-210 Tni-Mir-210 War-Mir-210 Xtr-Mir-210

Node of Origin (locus)

X. bocki

Node of Origin (family)

Bilateria

Genome context
(genome.xe)

scaffold1007: 23177-23237 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGAUGUGGGGGUGGCUGGUGUCGCCCGGCCGGCGCUGUGACUCUGCACAGAGCGCCCAUUGCGUGCCUUUGUGCGUGUGACAGCGGCGGUCGGAGAACAUCUCCGUGACAUCACAGAGGA

Get precursor sequence

Structure

        10          20         30        40        50        60
CUGAUGUGGGGGUGGCU--    -| GC       G      G  UC         CGCCCA 
                   GGUG UC  CCGGCCG CGCUGU AC  UGCACAGAG      U
                   CUAC AG  GGCUGGC GCGACA UG  GCGUGUUUC      U
AGGAGACACUACAGUGCCU    A^ A-       G      G  U-         CGUGCG 
 .       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

To	To	To

Star sequence

Xbo-Mir-210-P20_5p*

mirBase accession

None

Sequence

0- CGGCGCUGUGACUCUGCACAGAG -23

Get sequence

Mature sequence

Xbo-Mir-210-P20_3p

mirBase accession

None

Sequence

39- UUGUGCGUGUGACAGCGGCGGU -61

Get sequence