Mir-210

MirGeneDB ID

Ocu-Mir-210

Family name

MIR-210 (all species)

Seed

UGUGCGU

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-210-v1 Aae-Mir-210-v2 Aca-Mir-210 Aga-Mir-210-v1 Aga-Mir-210-v2 Agr-Mir-210 Ami-Mir-210 Bfl-Mir-210 Bge-Mir-210-v1 Bge-Mir-210-v2 Bla-Mir-210 Bta-Mir-210 Cfa-Mir-210 Cja-Mir-210 Cli-Mir-210 Cmi-Mir-210 Cpi-Mir-210 Cpo-Mir-210 Csc-Mir-210-P13a Csc-Mir-210-P13b Csc-Mir-210-P14 Cte-Mir-210-P6 Cte-Mir-210-P7 Dan-Mir-210-v1 Dan-Mir-210-v2 Dgr-Mir-210 Dlo-Mir-210-v1 Dlo-Mir-210-v2 Dma-Mir-210 Dme-Mir-210-v1 Dme-Mir-210-v2 Dmo-Mir-210-v1 Dmo-Mir-210-v2 Dno-Mir-210 Dpu-Mir-210 Dre-Mir-210 Dsi-Mir-210-v1 Dsi-Mir-210-v2 Dya-Mir-210-v1 Dya-Mir-210-v2 Eba-Mir-210 Ebu-Mir-210 Eca-Mir-210 Efe-Mir-210-P6 Egr-Mir-210 Esc-Mir-210-P15-v1 Esc-Mir-210-P15-v2 Esc-Mir-210-P16 Ete-Mir-210 Gga-Mir-210 Gja-Mir-210 Gmo-Mir-210 Gpa-Mir-210-v1 Gpa-Mir-210-v2 Hme-Mir-210-P3 Hme-Mir-210-P4 Hru-Mir-210-P23 Hru-Mir-210-P24 Hsa-Mir-210 Isc-Mir-210 Lan-Mir-210 Lch-Mir-210 Lgi-Mir-210 Lhy-Mir-210 Llo-Mir-210 Loc-Mir-210 Lpo-Mir-210-P8 Lpo-Mir-210-P9 Lpo-Mir-210-P10 Lpo-Mir-210-P11 Lpo-Mir-210-P12 Mal-Mir-210 Mdo-Mir-210 Mgi-Mir-210 Mml-Mir-210 Mmr-Mir-210 Mmu-Mir-210 Mom-Mir-210 Mun-Mir-210 Neu-Mir-210 Npo-Mir-210 Oan-Mir-210 Obi-Mir-210-P15-v1 Obi-Mir-210-P15-v2 Obi-Mir-210-P16 Ofu-Mir-210 Ovu-Mir-210-P15-v1 Ovu-Mir-210-P15-v2 Ovu-Mir-210-P16 Pab-Mir-210 Pau-Mir-210 Pbv-Mir-210 Pca-Mir-210 Pcr-Mir-210-P26 Pcr-Mir-210-P27 Pcr-Mir-210-P28 Pdu-Mir-210-P5 Pdu-Mir-210-P6 Pdu-Mir-210-P7 Pfl-Mir-210-P25a Pfl-Mir-210-P25b Pma-Mir-210 Pmi-Mir-210-v1 Pmi-Mir-210-v2 Rno-Mir-210 Sha-Mir-210 Sko-Mir-210 Sma-Mir-210 Sme-Mir-210-P17 Sme-Mir-210-P18 Snu-Mir-210 Spt-Mir-210 Spu-Mir-210-v1 Spu-Mir-210-v2 Sto-Mir-210-P1 Sto-Mir-210-P2 Tca-Mir-210-v1 Tca-Mir-210-v2 Tgu-Mir-210 Tni-Mir-210 Tur-Mir-210-P21 Tur-Mir-210-P22 War-Mir-210 Xbo-Mir-210-P19 Xbo-Mir-210-P20 Xla-Mir-210-P21 Xla-Mir-210-P22 Xtr-Mir-210

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(oryCun2_add)

1947597656: 49-108 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

NNNNNNNNNUAGCUCAAUGUGGUGGAUUCCAGCCACUGCCAACCGCACACUGCGCUGCUCCGGACCCACUGUGCGUGUGACAGCGGCUGAUCUGCCCCUGGGCAGCGCGAACCCCUUGGC

Get precursor sequence

Structure

        10        20            30        40        50         
NNNNNNNNNUAGCUCAAUGU----| UG   UC     A   C  AC      C  CGCUGC 
                        GG  GAU  CAGCC CUG CA  CGCACA UG      U
                        CC  CUA  GUCGG GAC GU  GCGUGU AC      C
CGGUUCCCCAAGCGCGACGGGUCC^ GU   --     C   A  GU      C  CCAGGC 
.       110       100        90          80        70        60

Deep sequencing

Go to detailed chart

Comment

Not in assembly but in trace archive.

3' NTU

Motifs

Tissue expression

He	Ki	Te	To	Wh

Star sequence

Ocu-Mir-210_5p*

mirBase accession

None

Sequence

0- AGCCACUGCCAACCGCACACUG -22

Get sequence

Mature sequence

Ocu-Mir-210_3p

mirBase accession

None

Sequence

38- CUGUGCGUGUGACAGCGGCUGA -60

Get sequence