Mir-210-P11

MirGeneDB ID

Lpo-Mir-210-P11

Family name

MIR-210 (all species)

Seed

UGUGCGU

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-210-P8 Lpo-Mir-210-P9 Lpo-Mir-210-P10 Lpo-Mir-210-P12

Orthologues

Aca-Mir-210 Agr-Mir-210 Ami-Mir-210 Bfl-Mir-210 Bla-Mir-210 Bta-Mir-210 Cfa-Mir-210 Cja-Mir-210 Cli-Mir-210 Cmi-Mir-210 Cpi-Mir-210 Cpo-Mir-210 Dgr-Mir-210 Dma-Mir-210 Dno-Mir-210 Dpu-Mir-210 Dre-Mir-210 Eba-Mir-210 Ebu-Mir-210 Eca-Mir-210 Egr-Mir-210 Ete-Mir-210 Gga-Mir-210 Gja-Mir-210 Gmo-Mir-210 Hsa-Mir-210 Isc-Mir-210 Lan-Mir-210 Lch-Mir-210 Lgi-Mir-210 Lhy-Mir-210 Llo-Mir-210 Loc-Mir-210 Mal-Mir-210 Mdo-Mir-210 Mgi-Mir-210 Mml-Mir-210 Mmr-Mir-210 Mmu-Mir-210 Mom-Mir-210 Mun-Mir-210 Neu-Mir-210 Npo-Mir-210 Oan-Mir-210 Ocu-Mir-210 Ofu-Mir-210 Pab-Mir-210 Pau-Mir-210 Pbv-Mir-210 Pca-Mir-210 Pma-Mir-210 Rno-Mir-210 Sha-Mir-210 Sko-Mir-210 Sma-Mir-210 Snu-Mir-210 Spt-Mir-210 Tgu-Mir-210 Tni-Mir-210 War-Mir-210 Xtr-Mir-210

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013671113.1: 23526-23583 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CCUUUUUACAUCACGACAGACUUUCACAGUAGUCGCUGAGCAUAGCACGAGAUGAUAAUCAAAGUCUUGUGCGUGUGACAGCGGCUAUCGUGAGAUGUCGCCACCAUCGAGGGAAAAA

Get precursor sequence

Structure

        10         20         30         40        50        
CCUUUUUACAUCACGACA-   -      A          A-|   A        UGAUA 
                   GAC UUUCAC GUAGUCGCUG  GCAU GCACGAGA     A
                   CUG AGAGUG UAUCGGCGAC  UGUG CGUGUUCU     U
AAAAAGGGAGCUACCACCG   U      C          AG^   -        GAAAC 
      110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-210-P11_5p*

mirBase accession

None

Sequence

0- AGUCGCUGAGCAUAGCACGAGA -22

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Mature sequence

Lpo-Mir-210-P11_3p

mirBase accession

None

Sequence

36- UUGUGCGUGUGACAGCGGCUAU -58

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