MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-210-P11

Family name MIR-210 (all species)
Seed UGUGCGU
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-210-P8  Lpo-Mir-210-P9  Lpo-Mir-210-P10  Lpo-Mir-210-P12 
Orthologues Aca-Mir-210  Ami-Mir-210  Bfl-Mir-210  Bla-Mir-210  Bta-Mir-210  Cfa-Mir-210  Cgi-Mir-210  Cli-Mir-210  Cmi-Mir-210  Cpi-Mir-210  Cpo-Mir-210  Dma-Mir-210  Dno-Mir-210  Dpu-Mir-210  Dre-Mir-210  Ebu-Mir-210  Efe-Mir-210  Ete-Mir-210  Gga-Mir-210  Gja-Mir-210  Gmo-Mir-210  Hsa-Mir-210  Isc-Mir-210  Lan-Mir-210  Lch-Mir-210  Lgi-Mir-210  Loc-Mir-210  Mal-Mir-210  Mdo-Mir-210  Mml-Mir-210  Mmu-Mir-210  Mun-Mir-210  Npo-Mir-210  Oan-Mir-210  Ocu-Mir-210  Pbv-Mir-210  Pma-Mir-210  Rno-Mir-210  Sha-Mir-210  Sko-Mir-210  Spt-Mir-210  Tgu-Mir-210  Tni-Mir-210  Xtr-Mir-210 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013671113.1: 23526-23583 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCUUUUUACAUCACGACAGACUUUCACAGUAGUCGCUGAGCAUAGCACGAGAUGAUAAUCAAAGUCUUGUGCGUGUGACAGCGGCUAUCGUGAGAUGUCGCCACCAUCGAGGGAAAAA
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Structure
        10         20         30         40        50        
CCUUUUUACAUCACGACA-   -      A          A-|   A        UGAUA 
                   GAC UUUCAC GUAGUCGCUG  GCAU GCACGAGA     A
                   CUG AGAGUG UAUCGGCGAC  UGUG CGUGUUCU     U
AAAAAGGGAGCUACCACCG   U      C          AG^   -        GAAAC 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-210-P11_5p*

mirBase accessionNone
Sequence
0- AGUCGCUGAGCAUAGCACGAGA -22
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Mature sequence

Lpo-Mir-210-P11_3p

mirBase accessionNone
Sequence
36- UUGUGCGUGUGACAGCGGCUAU -58
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