MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-210

Family name MIR-210 (all species)
Seed GCCACUG
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aae-Mir-210-v1  Aae-Mir-210-v2  Aca-Mir-210  Aga-Mir-210-v1  Aga-Mir-210-v2  Agr-Mir-210  Ami-Mir-210  Bfl-Mir-210  Bge-Mir-210-v1  Bge-Mir-210-v2  Bla-Mir-210  Bta-Mir-210  Cfa-Mir-210  Cja-Mir-210  Cli-Mir-210  Cmi-Mir-210  Cpi-Mir-210  Cpo-Mir-210  Csc-Mir-210-P13a  Csc-Mir-210-P13b  Csc-Mir-210-P14  Cte-Mir-210-P6  Cte-Mir-210-P7  Dan-Mir-210-v1  Dan-Mir-210-v2  Dgr-Mir-210  Dlo-Mir-210-v1  Dlo-Mir-210-v2  Dma-Mir-210  Dme-Mir-210-v1  Dme-Mir-210-v2  Dmo-Mir-210-v1  Dmo-Mir-210-v2  Dno-Mir-210  Dpu-Mir-210  Dre-Mir-210  Dsi-Mir-210-v1  Dsi-Mir-210-v2  Dya-Mir-210-v1  Dya-Mir-210-v2  Eba-Mir-210  Ebu-Mir-210  Eca-Mir-210  Efe-Mir-210-P6  Egr-Mir-210  Esc-Mir-210-P15-v1  Esc-Mir-210-P15-v2  Esc-Mir-210-P16  Ete-Mir-210  Gga-Mir-210  Gmo-Mir-210  Gpa-Mir-210-v1  Gpa-Mir-210-v2  Hme-Mir-210-P3  Hme-Mir-210-P4  Hru-Mir-210-P23  Hru-Mir-210-P24  Hsa-Mir-210  Isc-Mir-210  Lan-Mir-210  Lch-Mir-210  Lgi-Mir-210  Lhy-Mir-210  Llo-Mir-210  Loc-Mir-210  Lpo-Mir-210-P8  Lpo-Mir-210-P9  Lpo-Mir-210-P10  Lpo-Mir-210-P11  Lpo-Mir-210-P12  Mal-Mir-210  Mdo-Mir-210  Mgi-Mir-210  Mml-Mir-210  Mmr-Mir-210  Mmu-Mir-210  Mom-Mir-210  Mun-Mir-210  Neu-Mir-210  Npo-Mir-210  Oan-Mir-210  Obi-Mir-210-P15-v1  Obi-Mir-210-P15-v2  Obi-Mir-210-P16  Ocu-Mir-210  Ofu-Mir-210  Ovu-Mir-210-P15-v1  Ovu-Mir-210-P15-v2  Ovu-Mir-210-P16  Pab-Mir-210  Pau-Mir-210  Pbv-Mir-210  Pca-Mir-210  Pcr-Mir-210-P26  Pcr-Mir-210-P27  Pcr-Mir-210-P28  Pdu-Mir-210-P5  Pdu-Mir-210-P6  Pdu-Mir-210-P7  Pfl-Mir-210-P25a  Pfl-Mir-210-P25b  Pma-Mir-210  Pmi-Mir-210-v1  Pmi-Mir-210-v2  Rno-Mir-210  Sha-Mir-210  Sko-Mir-210  Sma-Mir-210  Sme-Mir-210-P17  Sme-Mir-210-P18  Snu-Mir-210  Spt-Mir-210  Spu-Mir-210-v1  Spu-Mir-210-v2  Sto-Mir-210-P1  Sto-Mir-210-P2  Tca-Mir-210-v1  Tca-Mir-210-v2  Tgu-Mir-210  Tni-Mir-210  Tur-Mir-210-P21  Tur-Mir-210-P22  War-Mir-210  Xbo-Mir-210-P19  Xbo-Mir-210-P20  Xla-Mir-210-P21  Xla-Mir-210-P22  Xtr-Mir-210 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015170943.1: 132886-132946 [+]
Precursor
(pre-Mir +30nt flank)
CUGUGUCGGGUUCAGCUCCAGAAGCAGGUGAGCCACUGACUAACGCACAUUGUGCUGCUAGUGUCCCCACUGUGCGUGUGACAGCGGCUAACCUGCUUUUCGGAUAUCACUGUGUCCCCUU
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Structure
        10          20        30        40        50          
CUGUGUCGGGUUCAGCU-  -|         G    A   ACUA       U  UGCUGCU 
                  CC AGAAGCAGGU AGCC CUG    ACGCACA UG       \
                  GG UUUUCGUCCA UCGG GAC    UGCGUGU AC       A
UUCCCCUGUGUCACUAUA  C^         A    C   AGUG       C  CCCUGUG 
 .       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Mature sequence

Gja-Mir-210_5p
mirBase accessionNone
Sequence 
0- AGCCACUGACUAACGCACAUUG -22
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Co-mature sequence

Gja-Mir-210_3p
mirBase accessionNone
Sequence 
39- CUGUGCGUGUGACAGCGGCUAA -61
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