Mir-210-v2

MirGeneDB ID

Dan-Mir-210-v2

Family name

MIR-210 (all species)

Seed

UUGUGCG

Species

Fruit fly (Drosophila ananassae)

MiRBase ID

dan-mir-210

Paralogues

Dan-Mir-210-v1

Orthologues

Aae-Mir-210-v2 Aca-Mir-210 Aga-Mir-210-v2 Agr-Mir-210 Ami-Mir-210 Bfl-Mir-210 Bge-Mir-210-v2 Bla-Mir-210 Bta-Mir-210 Cfa-Mir-210 Cja-Mir-210 Cli-Mir-210 Cmi-Mir-210 Cpi-Mir-210 Cpo-Mir-210 Dgr-Mir-210 Dlo-Mir-210-v2 Dma-Mir-210 Dme-Mir-210-v2 Dmo-Mir-210-v2 Dno-Mir-210 Dpu-Mir-210 Dre-Mir-210 Dsi-Mir-210-v2 Dya-Mir-210-v2 Eba-Mir-210 Ebu-Mir-210 Eca-Mir-210 Egr-Mir-210 Ete-Mir-210 Gga-Mir-210 Gja-Mir-210 Gmo-Mir-210 Gpa-Mir-210-v2 Hsa-Mir-210 Isc-Mir-210 Lan-Mir-210 Lch-Mir-210 Lgi-Mir-210 Lhy-Mir-210 Llo-Mir-210 Loc-Mir-210 Mal-Mir-210 Mdo-Mir-210 Mgi-Mir-210 Mml-Mir-210 Mmr-Mir-210 Mmu-Mir-210 Mom-Mir-210 Mun-Mir-210 Neu-Mir-210 Npo-Mir-210 Oan-Mir-210 Ocu-Mir-210 Ofu-Mir-210 Pab-Mir-210 Pau-Mir-210 Pbv-Mir-210 Pca-Mir-210 Pma-Mir-210 Pmi-Mir-210-v2 Rno-Mir-210 Sha-Mir-210 Sko-Mir-210 Sma-Mir-210 Snu-Mir-210 Spt-Mir-210 Spu-Mir-210-v2 Tca-Mir-210-v2 Tgu-Mir-210 Tni-Mir-210 War-Mir-210 Xtr-Mir-210

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Dana_caf1)

scaffold_13335: 1604034-1604092 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-210-v2)

Mir-210-v1 scaffold_13335: 1604034-1604092 [-] Ensembl
Mir-210-v2 scaffold_13335: 1604034-1604092 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GAUUCAACGAGCGUUAACGGUGCUUAUUGCAGCUGCUGGCCACUGCACAAGAUUAGACUUAAGACUCUUGUGCGUGUGACAGCGGCUAUUGUAAGAGGCCAUAGAAGCAACCAAUCAAC

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Structure

        10         20         30        40         50         
GAUUCAACGAGCGUUAAC-   G-|    UGC        GC   -         UUAGAC 
                   GGU  CUUAU   AGCUGCUG  CAC UGCACAAGA      \
                   CCG  GAAUG   UCGGCGAC  GUG GCGUGUUCU      U
CAACUAACCAACGAAGAUA   GA^    UUA        A-   U         CAGAAU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Fe

Star sequence

Dan-Mir-210-v2_5p*

mirBase accession

None

Sequence

0- AGCUGCUGGCCACUGCACAAGAU -23

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Mature sequence

Dan-Mir-210-v2_3p

mirBase accession

MIMAT0008433

Sequence

36- CUUGUGCGUGUGACAGCGGCUAU -59

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