MirGeneDB 2.1

MirGeneDB ID

Tca-Mir-210-v2

Family name MIR-210 (all species)
Seed UUGUGCG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-210
Paralogues Tca-Mir-210-v1 
Orthologues Aae-Mir-210-v2  Aca-Mir-210  Ami-Mir-210  Bfl-Mir-210  Bge-Mir-210-v2  Bla-Mir-210  Bta-Mir-210  Cfa-Mir-210  Cgi-Mir-210  Cli-Mir-210  Cmi-Mir-210  Cpi-Mir-210  Cpo-Mir-210  Dan-Mir-210-v2  Dma-Mir-210  Dme-Mir-210-v2  Dmo-Mir-210-v2  Dno-Mir-210  Dpu-Mir-210  Dre-Mir-210  Dsi-Mir-210-v2  Dya-Mir-210-v2  Ebu-Mir-210  Efe-Mir-210  Ete-Mir-210  Gga-Mir-210  Gja-Mir-210  Gmo-Mir-210  Hsa-Mir-210  Isc-Mir-210  Lan-Mir-210  Lch-Mir-210  Lgi-Mir-210  Loc-Mir-210  Mal-Mir-210  Mdo-Mir-210  Mml-Mir-210  Mmu-Mir-210  Mun-Mir-210  Npo-Mir-210  Oan-Mir-210  Ocu-Mir-210  Pbv-Mir-210  Pma-Mir-210  Pmi-Mir-210-v2  Rno-Mir-210  Sha-Mir-210  Sko-Mir-210  Spt-Mir-210  Spu-Mir-210-v2  Tgu-Mir-210  Tni-Mir-210  Xtr-Mir-210 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Tcas5.2)
LG4: 7127336-7127398 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-210-v2)
Mir-210-v1 LG4: 7127336-7127398 [-] Ensembl
Mir-210-v2 LG4: 7127336-7127398 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUAGUUGAAGACUUGGCUGAAUCUCACUGCAGCUGCUGGACGCUGCACAAGAUUAGAUAUUUUAGAACUCUUGUGCGUGUGACAGCGGCUAUUGUGGGUAUUCUUAUUCAACAAUCAACGGCU
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Structure
        10          20         30         40        50        60
AUAGUUGAAGACUUGGCU--    -     UGC        G-|   U        UUAGAUA 
                    GAAU CUCAC   AGCUGCUG  ACGC GCACAAGA       U
                    CUUA GGGUG   UCGGCGAC  UGUG CGUGUUCU       U
UCGGCAACUAACAACUUAUU    U     UUA        AG^   -        CAAGAUU 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-210-v2_5p*

mirBase accessionMIMAT0019120
Sequence
0- AGCUGCUGGACGCUGCACAAGAU -23
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Mature sequence

Tca-Mir-210-v2_3p

mirBase accessionMIMAT0008376
Sequence
39- CUUGUGCGUGUGACAGCGGCUAUU -63
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