MirGeneDB 3.0

MirGeneDB ID

Sko-Mir-210

Family name

MIR-210 (all species)

Seed

Species

Saccoglossus (Saccoglossus kowalevskii)

MiRBase ID

sko-mir-210

Paralogues

Orthologues

Aae-Mir-210-v1 Aae-Mir-210-v2 Aca-Mir-210 Aga-Mir-210-v1 Aga-Mir-210-v2 Agr-Mir-210 Ami-Mir-210 Bfl-Mir-210 Bge-Mir-210-v1 Bge-Mir-210-v2 Bla-Mir-210 Bta-Mir-210 Cfa-Mir-210 Cja-Mir-210 Cli-Mir-210 Cmi-Mir-210 Cpi-Mir-210 Cpo-Mir-210 Csc-Mir-210-P13a Csc-Mir-210-P13b Csc-Mir-210-P14 Cte-Mir-210-P6 Cte-Mir-210-P7 Dan-Mir-210-v1 Dan-Mir-210-v2 Dgr-Mir-210 Dlo-Mir-210-v1 Dlo-Mir-210-v2 Dma-Mir-210 Dme-Mir-210-v1 Dme-Mir-210-v2 Dmo-Mir-210-v1 Dmo-Mir-210-v2 Dno-Mir-210 Dpu-Mir-210 Dre-Mir-210 Dsi-Mir-210-v1 Dsi-Mir-210-v2 Dya-Mir-210-v1 Dya-Mir-210-v2 Eba-Mir-210 Ebu-Mir-210 Eca-Mir-210 Efe-Mir-210-P6 Egr-Mir-210 Esc-Mir-210-P15-v1 Esc-Mir-210-P15-v2 Esc-Mir-210-P16 Ete-Mir-210 Gga-Mir-210 Gja-Mir-210 Gmo-Mir-210 Gpa-Mir-210-v1 Gpa-Mir-210-v2 Hme-Mir-210-P3 Hme-Mir-210-P4 Hru-Mir-210-P23 Hru-Mir-210-P24 Hsa-Mir-210 Isc-Mir-210 Lan-Mir-210 Lch-Mir-210 Lgi-Mir-210 Lhy-Mir-210 Llo-Mir-210 Loc-Mir-210 Lpo-Mir-210-P8 Lpo-Mir-210-P9 Lpo-Mir-210-P10 Lpo-Mir-210-P11 Lpo-Mir-210-P12 Mal-Mir-210 Mdo-Mir-210 Mgi-Mir-210 Mml-Mir-210 Mmr-Mir-210 Mmu-Mir-210 Mom-Mir-210 Mun-Mir-210 Neu-Mir-210 Npo-Mir-210 Oan-Mir-210 Obi-Mir-210-P15-v1 Obi-Mir-210-P15-v2 Obi-Mir-210-P16 Ocu-Mir-210 Ofu-Mir-210 Ovu-Mir-210-P15-v1 Ovu-Mir-210-P15-v2 Ovu-Mir-210-P16 Pab-Mir-210 Pau-Mir-210 Pbv-Mir-210 Pca-Mir-210 Pcr-Mir-210-P26 Pcr-Mir-210-P27 Pcr-Mir-210-P28 Pdu-Mir-210-P5 Pdu-Mir-210-P6 Pdu-Mir-210-P7 Pfl-Mir-210-P25a Pfl-Mir-210-P25b Pma-Mir-210 Pmi-Mir-210-v1 Pmi-Mir-210-v2 Rno-Mir-210 Sha-Mir-210 Sma-Mir-210 Sme-Mir-210-P17 Sme-Mir-210-P18 Snu-Mir-210 Spt-Mir-210 Spu-Mir-210-v1 Spu-Mir-210-v2 Sto-Mir-210-P1 Sto-Mir-210-P2 Tca-Mir-210-v1 Tca-Mir-210-v2 Tgu-Mir-210 Tni-Mir-210 Tur-Mir-210-P21 Tur-Mir-210-P22 War-Mir-210 Xbo-Mir-210-P19 Xbo-Mir-210-P20 Xla-Mir-210-P21 Xla-Mir-210-P22 Xtr-Mir-210

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Skow_1.1)

NW_003131854.1: 344786-344843 [-]

Precursor
(pre-Mir +30nt flank)

GUUCGAUGUCACUAUCCAGGCCGGGAAGGGAGUUGCCGGAGCAUUGCACAACAAUUUUUAUGUAUGUUGUGCGUGCGACAGCGACUUCCGUCCGCCUGAUACUUUACCACAGAAUGAU

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Structure

        10            20        30        40        50         
GUUCGAUGUCACUAUCC----|   CG   A         CGGA    U        AUUUU 
                     AGGC  GGA GGGAGUUGC    GCAU GCACAACA     \
                     UCCG  CCU CCUUCAGCG    CGUG CGUGUUGU     U
UAGUAAGACACCAUUUCAUAG^   --   G         ACAG    -        AUGUA 
      110       100          90        80         70        60

Deep sequencing

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3' NTU

No

Motifs

No

Tissue expression

-

+

To

Star sequence

Sko-Mir-210_5p*

mirBase accession

Sequence

0- AGUUGCCGGAGCAUUGCACAACA -23

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Mature sequence

Sko-Mir-210_3p

mirBase accession

Sequence

36- UUGUGCGUGCGACAGCGACUUC -58

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