Mir-210-P25a

MirGeneDB ID

Pfl-Mir-210-P25a

Family name

MIR-210 (all species)

Seed

UGUGCGU

Species

Ptychodera (Ptychodera flava)

MiRBase ID

Paralogues

Pfl-Mir-210-P25b

Orthologues

Aca-Mir-210 Agr-Mir-210 Ami-Mir-210 Bfl-Mir-210 Bla-Mir-210 Bta-Mir-210 Cfa-Mir-210 Cja-Mir-210 Cli-Mir-210 Cmi-Mir-210 Cpi-Mir-210 Cpo-Mir-210 Dgr-Mir-210 Dma-Mir-210 Dno-Mir-210 Dpu-Mir-210 Dre-Mir-210 Eba-Mir-210 Ebu-Mir-210 Eca-Mir-210 Egr-Mir-210 Ete-Mir-210 Gga-Mir-210 Gja-Mir-210 Gmo-Mir-210 Hsa-Mir-210 Isc-Mir-210 Lan-Mir-210 Lch-Mir-210 Lgi-Mir-210 Lhy-Mir-210 Llo-Mir-210 Loc-Mir-210 Mal-Mir-210 Mdo-Mir-210 Mgi-Mir-210 Mml-Mir-210 Mmr-Mir-210 Mmu-Mir-210 Mom-Mir-210 Mun-Mir-210 Neu-Mir-210 Npo-Mir-210 Oan-Mir-210 Ocu-Mir-210 Ofu-Mir-210 Pab-Mir-210 Pau-Mir-210 Pbv-Mir-210 Pca-Mir-210 Pma-Mir-210 Rno-Mir-210 Sha-Mir-210 Sko-Mir-210 Sma-Mir-210 Snu-Mir-210 Spt-Mir-210 Tgu-Mir-210 Tni-Mir-210 War-Mir-210 Xtr-Mir-210

Node of Origin (locus)

P. flava

Node of Origin (family)

Bilateria

Genome context
(Pfl)

LD347622.1: 60060-60120 [-]

Precursor
(pre-Mir +30nt flank)

AUGCGAGCACAGUUUACAGAACAGGAAGGAAGCCGCUGCCACAUUGCACAGCAGUGCAGUCGAGAAUUGUUGUGCGUGCGACAGCGACUUCCGUCCUUCUGCAAAAUACAAAUUCCAGAUU

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Structure

        10            20        30        40        50        60
AUGCGAGCACAGUUUAC----|  AC    A     C     CCA   U        GUGCAG 
                     AGA  AGGA GGAAG CGCUG   CAU GCACAGCA      U
                     UCU  UCCU CCUUC GCGAC   GUG CGUGUUGU      C
UUAGACCUUAAACAUAAAACG^  --    G     A     AGC   -        UAAGAG 
 .       110       100          90        80         70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

To

Star sequence

Pfl-Mir-210-P25a_5p*

mirBase accession

None

Sequence

0- AGCCGCUGCCACAUUGCACAGCA -23

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Mature sequence

Pfl-Mir-210-P25a_3p

mirBase accession

None

Sequence

39- UUGUGCGUGCGACAGCGACUUC -61

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