MirGeneDB 3.0

MirGeneDB ID

Hru-Mir-210-P23

Family name MIR-210 (all species)
Seed UGUGCGU
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues Hru-Mir-210-P24 
Orthologues Aca-Mir-210  Agr-Mir-210  Ami-Mir-210  Bfl-Mir-210  Bla-Mir-210  Bta-Mir-210  Cfa-Mir-210  Cja-Mir-210  Cli-Mir-210  Cmi-Mir-210  Cpi-Mir-210  Cpo-Mir-210  Dgr-Mir-210  Dma-Mir-210  Dno-Mir-210  Dpu-Mir-210  Dre-Mir-210  Eba-Mir-210  Ebu-Mir-210  Eca-Mir-210  Egr-Mir-210  Ete-Mir-210  Gga-Mir-210  Gja-Mir-210  Gmo-Mir-210  Hsa-Mir-210  Isc-Mir-210  Lan-Mir-210  Lch-Mir-210  Lgi-Mir-210  Lhy-Mir-210  Llo-Mir-210  Loc-Mir-210  Mal-Mir-210  Mdo-Mir-210  Mgi-Mir-210  Mml-Mir-210  Mmr-Mir-210  Mmu-Mir-210  Mom-Mir-210  Mun-Mir-210  Neu-Mir-210  Npo-Mir-210  Oan-Mir-210  Ocu-Mir-210  Ofu-Mir-210  Pab-Mir-210  Pau-Mir-210  Pbv-Mir-210  Pca-Mir-210  Pma-Mir-210  Rno-Mir-210  Sha-Mir-210  Sko-Mir-210  Sma-Mir-210  Snu-Mir-210  Spt-Mir-210  Tgu-Mir-210  Tni-Mir-210  War-Mir-210  Xtr-Mir-210 
Node of Origin (locus) H. rufescens
Node of Origin (family) Bilateria
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)
JALGQA010000006.1: 28697465-28697524 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAAGUUACUGUUAACAAAUGUCGCAUGUCUGUUGCUGUGUCACGAUACAAGAAGAAGAAAUGAUUUCUUGUGCGUGUCACAGUAACAAAACAUGGUCAUAUAGAACGUCUCGAUUGAAG
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Structure
        10          20        30         40        50          
UGAAGUUACUGUUAACAA--|  UCG     C-          U    A       AGAAGA 
                    AUG   CAUGU  UGUUGCUGUG CACG UACAAGA      \
                    UAC   GUACA  ACAAUGACAC GUGC GUGUUCU      A
GAAGUUAGCUCUGCAAGAUA^  UG-     AA          U    -       UUAGUA 
.       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Hru-Mir-210-P23_5p* (predicted)

mirBase accessionNone
Sequence
0- UGUUGCUGUGUCACGAUACAAGA -23
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Mature sequence

Hru-Mir-210-P23_3p

mirBase accessionNone
Sequence
38- UUGUGCGUGUCACAGUAACAAA -60
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