MirGeneDB ID | Sme-Mir-210-P18 |
Family name |
MIR-210 (all species) |
Seed |
UGUGCGU |
Species |
Freshwater planarian (Schmidtea mediterranea) |
MiRBase ID |
sme-mir-2164
|
Paralogues |
Sme-Mir-210-P17
|
Orthologues |
Aca-Mir-210
Agr-Mir-210
Ami-Mir-210
Bfl-Mir-210
Bla-Mir-210
Bta-Mir-210
Cfa-Mir-210
Cja-Mir-210
Cli-Mir-210
Cmi-Mir-210
Cpi-Mir-210
Cpo-Mir-210
Dgr-Mir-210
Dma-Mir-210
Dno-Mir-210
Dpu-Mir-210
Dre-Mir-210
Eba-Mir-210
Ebu-Mir-210
Eca-Mir-210
Egr-Mir-210
Ete-Mir-210
Gga-Mir-210
Gja-Mir-210
Gmo-Mir-210
Hsa-Mir-210
Isc-Mir-210
Lan-Mir-210
Lch-Mir-210
Lgi-Mir-210
Lhy-Mir-210
Llo-Mir-210
Loc-Mir-210
Mal-Mir-210
Mdo-Mir-210
Mgi-Mir-210
Mml-Mir-210
Mmr-Mir-210
Mmu-Mir-210
Mom-Mir-210
Mun-Mir-210
Neu-Mir-210
Npo-Mir-210
Oan-Mir-210
Ocu-Mir-210
Ofu-Mir-210
Pab-Mir-210
Pau-Mir-210
Pbv-Mir-210
Pca-Mir-210
Pma-Mir-210
Rno-Mir-210
Sha-Mir-210
Sko-Mir-210
Sma-Mir-210
Snu-Mir-210
Spt-Mir-210
Tgu-Mir-210
Tni-Mir-210
War-Mir-210
Xtr-Mir-210
|
Node of Origin (locus) |
S. mediterranea
|
Node of Origin (family) |
Bilateria
|
Genome context (Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000022_dd_Smes_g4_22: 2834662-2834717 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUUUUAUUAACCAUAUUCAGGUAAUAAAAUUAUAUUUGAUUCACGUAGAGAUUGAGAUCUAUCUUGUGCGUGAUAUCAAGUAUAAUAAUGUUCUGACUCUUCAUCUAAUAUAUAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
AUUUUAUUAACCAUAUU----| UA AA - - UUGA
CAGG AUA AUUAUAUUUGAU UCACGUA GAGA G
GUCU UGU UAAUAUGAACUA AGUGCGU UUCU A
AAAUAUAUAAUCUACUUCUCA^ -- AA U G AUCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ag |
Ag |
Di |
Gf |
Ne |
Ph |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Wh |
Wh |
Wh |
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Star sequence |
Sme-Mir-210-P18_5p* |
mirBase accession | MIMAT0012156 |
Sequence |
0- UAUAUUUGAUUCACGUAGAGA -21
Get sequence
|
Mature sequence |
Sme-Mir-210-P18_3p |
mirBase accession | MIMAT0011259 |
Sequence |
33- UUGUGCGUGAUAUCAAGUAUAAU -56
Get sequence
|