MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-1805-P1

Family name MIR-1805 (all species)
Seed GUAUUGG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-1805-P2 
Orthologues Aca-Mir-1805  Ami-Mir-1805  Cli-Mir-1805  Cpi-Mir-1805  Gga-Mir-1805  Mdo-Mir-1805  Neu-Mir-1805  Pbv-Mir-1805  Sha-Mir-1805  Spt-Mir-1805  Tgu-Mir-1805  Xtr-Mir-1805 
Node of Origin (locus) X. laevis
Node of Origin (family) Tetrapoda
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030726.1: 112903529-112903587 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGUGUAUGAUAAAAUGGAAUGCUCUGGGAGUUGUAGUCUUUCAAACAGCUGUGAAUUUCUAUACCUGUAUUGGAACACUACAGCUCCUAGAAAUUCCUAGUCUCUCAGUCAUCAAGA
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Structure
        10           20        30        40         50        
CGUGUGUAUGAUAAAAU---|    GC               C      -    CUGUGAA 
                    GGAAU  UCUGGGAGUUGUAGU UUUCAA ACAG       U
                    CCUUA  AGAUCCUCGACAUCA AAGGUU UGUC       U
AGAACUACUGACUCUCUGAU^    A-               C      A    CAUAUCU 
       110       100         90        80        70        60
Deep sequencing
CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Em
Star sequence

Xla-Mir-1805-P1_5p*
mirBase accessionNone
Sequence 
0- AGUUGUAGUCUUUCAAACAGC -21
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Mature sequence

Xla-Mir-1805-P1_3p
mirBase accessionNone
Sequence 
37- UGUAUUGGAACACUACAGCUCC -59
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