MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-1805

Family name MIR-1805 (all species)
Seed GUAUUGG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1805  Ami-Mir-1805  Cli-Mir-1805  Cpi-Mir-1805  Gga-Mir-1805  Gja-Mir-1805-P3  Gja-Mir-1805-P4  Mdo-Mir-1805  Neu-Mir-1805  Pbv-Mir-1805  Sha-Mir-1805  Spt-Mir-1805  Tgu-Mir-1805  Xla-Mir-1805-P1  Xla-Mir-1805-P2 
Node of Origin (locus) Tetrapoda
Node of Origin (family) Tetrapoda
Genome context
(xenTro9_add)		 chr2: 110661937-110661995 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUGGAUGUGAUCAAAUGGAAUGCUCUGGGAGUUGUAGUCUUUCAAACAGCUGUGAAUUUCUAUACCUGUAUUGGAACACUACAGCUCCUAGAAAUUCCUAGUCUCUCAAUCAUCAAGA
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Structure
        10           20        30        40         50        
UAUGGAUGUGAUCAAAU---|    GC               C      -    CUGUGAA 
                    GGAAU  UCUGGGAGUUGUAGU UUUCAA ACAG       U
                    CCUUA  AGAUCCUCGACAUCA AAGGUU UGUC       U
AGAACUACUAACUCUCUGAU^    A-               C      A    CAUAUCU 
       110       100         90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
An Br Em Em He Ve
Star sequence

Xtr-Mir-1805_5p*
mirBase accessionNone
Sequence 
0- AGUUGUAGUCUUUCAAACAGC -21
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Mature sequence

Xtr-Mir-1805_3p
mirBase accessionNone
Sequence 
37- UGUAUUGGAACACUACAGCUCC -59
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