MirGeneDB ID | Xla-Mir-455-P4 |
Family name |
MIR-455 (all species) |
Seed |
AUGUGCC |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
xla-mir-455
|
Paralogues |
Xla-Mir-455-P3
|
Orthologues |
Aca-Mir-455
Ami-Mir-455
Bta-Mir-455
Cfa-Mir-455
Cli-Mir-455
Cmi-Mir-455
Cpi-Mir-455
Cpo-Mir-455
Dno-Mir-455
Ete-Mir-455
Gga-Mir-455
Gja-Mir-455
Hsa-Mir-455
Lch-Mir-455
Loc-Mir-455
Mdo-Mir-455
Mml-Mir-455
Mmu-Mir-455
Mun-Mir-455
Oan-Mir-455
Ocu-Mir-455
Pbv-Mir-455
Pma-Mir-455
Rno-Mir-455
Sha-Mir-455
Spt-Mir-455
Sto-Mir-455
Tgu-Mir-455
Xtr-Mir-455
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_001663975.1_XLA_v2) |
NW_016694861.1: 369971-370028 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAUAGAAUGCCGUGCUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGUUUAUUUCAUCACGGAGA
Get precursor sequence
|
Structure | 10 20 30 40 50
CAUAGAAUGCCGUGCUC- -| U UG G U A C UGGAA
CC UGG G AG GUAUGUGCCC UGGACU CAU G G
GG ACU C UC CAUAUACGGG ACCUGA GUA C C
AGAGGCACUACUUUAUUU A^ C GU A U C C ACGAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There are mutliple Dicer cuts on the 3p arm and a second Drosha cut -1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Xla-Mir-455-P4_5p |
mirBase accession | MIMAT0046605 |
Sequence |
0- UAUGUGCCCUUGGACUACAUCG -22
Get sequence
|
Star sequence |
Xla-Mir-455-P4_3p* |
mirBase accession | MIMAT0046606 |
Sequence |
36- AUGCAGUCCAUGGGCAUAUACA -58
Get sequence
|