| MirGeneDB ID | Aca-Mir-129-P4 |
|---|
| Family name |
MIR-129 (all species) |
|---|
| Seed |
UUUUUGC |
|---|
| Species |
Green anole lizard (Anolis carolinensis) |
|---|
| MiRBase ID |
aca-mir-129b
|
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| Paralogues |
Aca-Mir-129-P2
|
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| Orthologues |
Ami-Mir-129-P4
Cmi-Mir-129-P4
Gja-Mir-129-P4
Lch-Mir-129-P4
Mun-Mir-129-P4
Pbv-Mir-129-P4
Spt-Mir-129-P4
Sto-Mir-129-P4
Xla-Mir-129-P4
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Chordata
|
|---|
Genome context
(anoCar2) |
6: 79191978-79192046 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GCAGCAACAGCAUCAGGGUCUUCCCUGGGUCUUUUUGCGGUCUGGGCUUUCUGGGUCUGUCCAACCCCCGUAUCAGAAAGCCCUUACCCCAAAAAGCAUCCGGGGCUGGACGAGGGCAUCGCCGCGACG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCAGCAACAGCAUCAGG- U- -| C CU UGGGUCUGUCC
GUCU CCCUGGGU CUUUUUG GGU GGGCUUUC A
CAGG GGGGCCUA GAAAAAC CCA CCCGAAAG A
GCAGCGCCGCUACGGGAG UC C^ C UU ACUAUGCCCCC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Aca-Mir-129-P4_5p |
| mirBase accession | MIMAT0021736 |
|---|
| Sequence |
0- CUUUUUGCGGUCUGGGCUUUC -21
Get sequence
|
|---|
| Star sequence |
Aca-Mir-129-P4_3p* |
| mirBase accession | MIMAT0021737 |
|---|
| Sequence |
47- AAGCCCUUACCCCAAAAAGCAU -69
Get sequence
|
|---|
