MirGeneDB ID | Cmi-Mir-129-P4 |
Family name |
MIR-129 (all species) |
Seed |
UUUUUGC |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
Cmi-Mir-129-P2
|
Orthologues |
Aca-Mir-129-P4
Ami-Mir-129-P4
Gja-Mir-129-P4
Lch-Mir-129-P4
Mun-Mir-129-P4
Pbv-Mir-129-P4
Spt-Mir-129-P4
Sto-Mir-129-P4
Xla-Mir-129-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Chordata
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Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI637116.1: 4119-4183 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAGAAGGAUGGAAGAAGUCUCUCUUGGAUCUUUUUGCGGUCUGGGCUUUCUGUGUUUAUCCAAACUAUUCAGAAAGCCCUUACCCAAAAAGCGUUUGAGGUGGACACUCUCAACGCUGGAUUUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAAGAAGGAUGGAAGAA-- CU UG -| C CU UGUGUUUAUC
GUCU CU GAU CUUUUUG GGU GGGCUUUC \
CAGG GA UUG GAAAAAC CCA CCCGAAAG C
GUUUAGGUCGCAACUCUCA UG GU C^ - UU ACUUAUCAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Mir-129-P4_5p |
mirBase accession | None |
Sequence |
0- CUUUUUGCGGUCUGGGCUUUC -21
Get sequence
|
Star sequence |
Cmi-Mir-129-P4_3p* |
mirBase accession | None |
Sequence |
44- AAGCCCUUACCCAAAAAGCGU -65
Get sequence
|