MirGeneDB 3.0

MirGeneDB ID

Cmi-Mir-129-P4

Family name MIR-129 (all species)
Seed UUUUUGC
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-129-P2 
Orthologues Aca-Mir-129-P4  Ami-Mir-129-P4  Gja-Mir-129-P4  Lch-Mir-129-P4  Mun-Mir-129-P4  Pbv-Mir-129-P4  Spt-Mir-129-P4  Sto-Mir-129-P4  Xla-Mir-129-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI637116.1: 4119-4183 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGAAGGAUGGAAGAAGUCUCUCUUGGAUCUUUUUGCGGUCUGGGCUUUCUGUGUUUAUCCAAACUAUUCAGAAAGCCCUUACCCAAAAAGCGUUUGAGGUGGACACUCUCAACGCUGGAUUUG
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Structure
        10          20        30         40        50        60  
AAAGAAGGAUGGAAGAA--    CU  UG   -|      C   CU        UGUGUUUAUC 
                   GUCU  CU  GAU CUUUUUG GGU  GGGCUUUC          \
                   CAGG  GA  UUG GAAAAAC CCA  CCCGAAAG          C
GUUUAGGUCGCAACUCUCA    UG  GU   C^      -   UU        ACUUAUCAAA 
   120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-129-P4_5p

mirBase accessionNone
Sequence
0- CUUUUUGCGGUCUGGGCUUUC -21
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Star sequence

Cmi-Mir-129-P4_3p*

mirBase accessionNone
Sequence
44- AAGCCCUUACCCAAAAAGCGU -65
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