| MirGeneDB ID | Aga-Mir-970 |
|---|
| Family name |
MIR-970 (all species) |
|---|
| Seed |
CAUAAGA |
|---|
| Species |
African malaria mosquito (Anopheles gambiae) |
|---|
| MiRBase ID |
aga-mir-970
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aae-Mir-970
Dan-Mir-970
Dme-Mir-970
Dmo-Mir-970
Dsi-Mir-970
Dya-Mir-970
Gpa-Mir-970
Hme-Mir-970
Tca-Mir-970
|
|---|
| Node of Origin (locus) |
Aparaglossata
|
|---|
| Node of Origin (family) |
Aparaglossata
|
|---|
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic) |
NC_064600.1: 138073-138140 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GACGCCGGUCAGAAAUGGCUGACGGAAGAUAGCCAGCGUUUGUUUUAUUUGGUAUGUAACUACUGCUGCAAGCUAUAUCAUAAGACACACGCGGCUAUUUUCCGCAACCCGAACCAGCAAGCGCCGUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GACGCCGGUCAGAAAUGGC---| A A U UUGGUAUGUAACUAC
UG CGGAAGAUAGCC GCGU UGUUUUAU \
AC GCCUUUUAUCGG CGCA ACAGAAUA U
UUGCCGCGAACGACCAAGCCCA^ - - C CUAUAUCGAACGUCG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
| |
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Aga-Mir-970_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGCCAGCGUUUGUUUUAUUUG -21
Get sequence
|
|---|
| Mature sequence |
Aga-Mir-970_3p |
| mirBase accession | MIMAT0010105 |
|---|
| Sequence |
47- UCAUAAGACACACGCGGCUAU -68
Get sequence
|
|---|
