MirGeneDB ID | Dan-Mir-970 |
Family name |
MIR-970 (all species) |
Seed |
CAUAAGA |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-970
Aga-Mir-970
Dme-Mir-970
Dmo-Mir-970
Dsi-Mir-970
Dya-Mir-970
Gpa-Mir-970
Hme-Mir-970
Tca-Mir-970
|
Node of Origin (locus) |
Aparaglossata
|
Node of Origin (family) |
Aparaglossata
|
Genome context (Dana_caf1) |
scaffold_13117: 3438256-3438320 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUUUUUAGUGGAAGAAAGGCAUUUGUUGCAGCUAGCGGGUGUUUUAUUUGGUAGCUGAUAUCGAAAGAAUCUAUCAUAAGACACACGCGGCUAUAAUCGAUGUCCUUAGAGUCUACAAGCUAAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUUUUUAGUGGAAGAAA--| U C A G UU GCUGAUAU
GGCAUU GUUG AGCU GCG GUGUUUUA UGGUA C
CUGUAG UAAU UCGG CGC CACAGAAU ACUAU G
AAAUCGAACAUCUGAGAUUC^ C A - A -- CUAAGAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Dan-Mir-970_5p* |
mirBase accession | None |
Sequence |
0- AGCUAGCGGGUGUUUUAUUUGGUA -24
Get sequence
|
Mature sequence |
Dan-Mir-970_3p |
mirBase accession | None |
Sequence |
44- UCAUAAGACACACGCGGCUAU -65
Get sequence
|