| MirGeneDB ID | Ava-Mir-12594-P1 |
|---|
| Family name |
MIR-12594 (all species) |
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| Seed |
UAUCAGU |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Mir-12594-P2
|
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| Orthologues |
Bko-Mir-12594
Bpl-Mir-12594
Sne-Mir-12594
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
Rotifera
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075494.1: 14682793-14682855 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGGAAAUAUACUAACAAGACUUUGUCUAAACGGUAGUUCGCUAUUGAUAACAGUUGUCGUAUACUAAUCUGUAUCAGUAGCUCUACUACUGAAUAGCCAAUUGAAGUUACUAACGACGAUUGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGGAAAUAUACUAACAAGACU-- U AA UC-| A UUGUCGU
UUG CUA CGGUAGU GCUAUUGAUA CAG \
AAC GAU GUCAUCA CGAUGACUAU GUC A
AGUUAGCAGCAAUCAUUGAAGUU C AA UCU^ - UAAUCAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Ava-Mir-12594-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGGUAGUUCGCUAUUGAUAACAG -23
Get sequence
|
|---|
| Mature sequence |
Ava-Mir-12594-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
40- GUAUCAGUAGCUCUACUACUGAA -63
Get sequence
|
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