MirGeneDB 3.0
MirGeneDB ID

Sne-Mir-12594

Family name MIR-12594 (all species)
Seed AGUAAUG
Species Seison (Seison nebaliae)
MiRBase ID
Paralogues
Orthologues Ava-Mir-12594-P1  Ava-Mir-12594-P2  Bko-Mir-12594  Bpl-Mir-12594 
Node of Origin (locus) Rotifera
Node of Origin (family) Rotifera
Genome context
(S.nebaliae-strainB-GA2.2-3295Contigs_manual)		 k141_2879: 53998-54215 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCUAUUCAUUAUAACGUCAUCUAAUCGUUCAGUAAUGAGUCGCUGCAUAACGGUCGUUGCUAAAUAAUCGCCACUGAUAAUUGGAUUGAUGAGAAUAAUAAUGUUUUAUCUGCUAUGGAUCUAUUGGCUUUCAGCUCAUCACAUAAAUUGACUAAUUGCUAAUUAAUGAAAUGAAAGAAAAACAUUUAAUUUCACCAUAUCUAAUCUCGAUUAACGAUUAAUCCGUAUCAGUAGCUCUAUUACUGGAUGAUGUUGAUGUAUUCAACUUUCAAUUUUU
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Structure
        10         20         30         40        50        60        70        80        90       100       110       120       130         
UUCUAUUCAUUAUAACGU-    UA-             -|   CG   C   A   UCGUUGCUAAAUAAUCGCCACUGAUAAUUGGAUUGAUGAGAAUAAUAAUGUUUUAUCUGCUAUGGAUCUAUUGGCUUUCAGCUC 
                   CAUC   AUCGUUCAGUAAU GAGU  CUG AUA CGG                                                                                    \
                   GUAG   UAGUAGGUCAUUA CUCG  GAC UAU GCC                                                                                    A
UUUUUAACUUUCAACUUAU    UUG             U^   AU   -   -   UAAUUAGCAAUUAGCUCUAAUCUAUACCACUUUAAUUUACAAAAAGAAAGUAAAGUAAUUAAUCGUUAAUCAGUUAAAUACACU 
      270       260       250       240       230         220       210       200       190       180       170       160       150       140
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Po
Mature sequence

Sne-Mir-12594_5p
mirBase accessionNone
Sequence 
0- CAGUAAUGAGUCGCUGCAUAACGGU -25
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Co-mature sequence

Sne-Mir-12594_3p
mirBase accessionNone
Sequence 
195- GUAUCAGUAGCUCUAUUACUGGA -218
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