MirGeneDB 3.0

MirGeneDB ID

Bpl-Mir-12594

Family name MIR-12594 (all species)
Seed UAUCAGU
Species Monogonont Rotifer 1 (Brachionus plicatilis)
MiRBase ID
Paralogues
Orthologues Ava-Mir-12594-P1  Ava-Mir-12594-P2  Bko-Mir-12594  Sne-Mir-12594 
Node of Origin (locus) Rotifera
Node of Origin (family) Rotifera
Genome context
(Bpl_ASM1027981)
QEOQ01000206.1: 1063707-1063776 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUGUCGAACUCAAUACUGAGACUUGUUCCAGUGGUACAGCGCUGAUUAACAGUUGUAAUAUGCUGACUAAUUUCUGUAUCAGUAGCUCUACUACUGAAUCAAGCUCAGUUCUGAUCAUCUUAUCGGCA
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Structure
        10           20        30        40         50        60     
AAUUGUCGAACUCAAUA---|    A    UUC        C   -      UA    UUGUAAUAUG 
                    CUGAG CUUG   CAGUGGUA AGC GCUGAU  ACAG          \
                    GACUC GAAC   GUCAUCAU UCG UGACUA  UGUC          C
ACGGCUAUUCUACUAGUCUU^    -    UAA        C   A      --    UUUAAUCAGU 
.       120       110        100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Bpl-Mir-12594_5p* (predicted)

mirBase accessionNone
Sequence
0- CAGUGGUACAGCGCUGAUUAACAG -24
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Mature sequence

Bpl-Mir-12594_3p

mirBase accessionNone
Sequence
47- GUAUCAGUAGCUCUACUACUGAA -70
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