MirGeneDB ID | Ava-Mir-12594-P2 |
Family name |
MIR-12594 (all species) |
Seed |
UAUCAGU |
Species |
Bdelloid rotifer (Adineta vaga) |
MiRBase ID |
|
Paralogues |
Ava-Mir-12594-P1
|
Orthologues |
Bko-Mir-12594
Bpl-Mir-12594
Sne-Mir-12594
|
Node of Origin (locus) |
A. vaga
|
Node of Origin (family) |
Rotifera
|
Genome context (GCA_021613535.1_ASM2161353v1_AVA) |
CP075495.1: 2609043-2609105 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUGAAUAACACAACGAUGACUUUGUCUAACCGGUAGUUAGCUAUUGAUAACAGUUGUCAAAUACUAAUCUGUAUCAGUAGCUCUACUACUGACUAGCCAACAUAUGUCACUAUCGACGUUUUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUGAAUAACACAACGAUGACU-- U AC U-| A UUGUCAA
UUG CUA CGGUAGU AGCUAUUGAUA CAG \
AAC GAU GUCAUCA UCGAUGACUAU GUC A
GUUUUGCAGCUAUCACUGUAUAC C CA UC^ - UAAUCAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Ava-Mir-12594-P2_5p* |
mirBase accession | None |
Sequence |
0- CGGUAGUUAGCUAUUGAUAACAG -23
Get sequence
|
Mature sequence |
Ava-Mir-12594-P2_3p |
mirBase accession | None |
Sequence |
40- GUAUCAGUAGCUCUACUACUGAC -63
Get sequence
|