| MirGeneDB ID | Ava-Mir-12594-P2 |
|---|
| Family name |
MIR-12594 (all species) |
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| Seed |
UAUCAGU |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Mir-12594-P1
|
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| Orthologues |
Bko-Mir-12594
Bpl-Mir-12594
Sne-Mir-12594
|
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
Rotifera
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075495.1: 2609043-2609105 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUGAAUAACACAACGAUGACUUUGUCUAACCGGUAGUUAGCUAUUGAUAACAGUUGUCAAAUACUAAUCUGUAUCAGUAGCUCUACUACUGACUAGCCAACAUAUGUCACUAUCGACGUUUUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUGAAUAACACAACGAUGACU-- U AC U-| A UUGUCAA
UUG CUA CGGUAGU AGCUAUUGAUA CAG \
AAC GAU GUCAUCA UCGAUGACUAU GUC A
GUUUUGCAGCUAUCACUGUAUAC C CA UC^ - UAAUCAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Ava-Mir-12594-P2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGGUAGUUAGCUAUUGAUAACAG -23
Get sequence
|
|---|
| Mature sequence |
Ava-Mir-12594-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
40- GUAUCAGUAGCUCUACUACUGAC -63
Get sequence
|
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