| MirGeneDB ID | Bko-Mir-12594 |
|---|
| Family name |
MIR-12594 (all species) |
|---|
| Seed |
UAUCAGU |
|---|
| Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Ava-Mir-12594-P1
Ava-Mir-12594-P2
Bpl-Mir-12594
Sne-Mir-12594
|
|---|
| Node of Origin (locus) |
Rotifera
|
|---|
| Node of Origin (family) |
Rotifera
|
|---|
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000412.1: 1986186-1986255 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGAAAUAUGAUUCAAUACUGAGACUUGUUCCAGUGGUACAGCGCUGAUUAACAGUUGUAAUAUGCUAACAAGUUUCUGUAUCAGUAGCUCUACUACUGAAACAAGCUCAGUUCUGCUCAUCCUAUCUGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGAAAUAUGAUUCAAUA---| A C C - UA UUGUAAUAUG
CUGAG CUUGUU CAGUGGUA AGC GCUGAU ACAG \
GACUC GAACAA GUCAUCAU UCG UGACUA UGUC C
ACGUCUAUCCUACUCGUCUU^ - A C A -- UUUGAACAAU
. 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bko-Mir-12594_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CAGUGGUACAGCGCUGAUUAACAG -24
Get sequence
|
|---|
| Mature sequence |
Bko-Mir-12594_3p |
| mirBase accession | None |
|---|
| Sequence |
47- GUAUCAGUAGCUCUACUACUGAA -70
Get sequence
|
|---|
