MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-4868-P3

Family name MIR-4868 (all species)
Seed CAGCUCC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-4868c
Paralogues Bfl-Mir-4868-P1  Bfl-Mir-4868-P2 
Orthologues
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049994.1: 9332985-9333043 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-4868-P3)		 Mir-22-P2c NC_049994.1: 9332985-9333043 [+] UCSC
Mir-4868-P3 NC_049994.1: 9332985-9333043 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UGCUGAUGAUGUGUACUGCUCAUGUCAGUACUGGUGAGUCUGGAUGCUGAUGAUAUGUUAGUUCCCAUCAGCUCCAAGGCUGAUCAGUAGUGAUGUGAGAUCUACUCGACGUUGUAUUC
Get precursor sequence
Structure
        10          20        30        40         50         
UGCUGAUGAUGUGUACUG--         G       G    -|   U       AUAUGU 
                    CUCAUGUCA UACUGGU AGUC UGGA GCUGAUG      \
                    GAGUGUAGU AUGACUA UCGG ACCU CGACUAC      U
CUUAUGUUGCAGCUCAUCUA         G       G    A^   -       CCUUGA 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Bfl-Mir-4868-P3_5p*
mirBase accessionMIMAT0020106
Sequence 
0- CUGGUGAGUCUGGAUGCUGAUG -22
Get sequence
Mature sequence

Bfl-Mir-4868-P3_3p
mirBase accessionMIMAT0020107
Sequence 
37- UCAGCUCCAAGGCUGAUCAGUA -59
Get sequence