MirGeneDB 3.0

MirGeneDB ID

Bko-Mir-87-o7

Family name MIR-87 (all species)
Seed UGAGCAA
Species Monogonont Rotifer 2 (Brachionus koreanus)
MiRBase ID
Paralogues
Orthologues Bpl-Mir-87-o7  Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) Brachionus
Node of Origin (family) Protostomia
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom)
PJRA01000263.1: 5959829-5959907 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCAUUUGUAUUGAGUAUAAAUUUAACUAUUGCACUUGAAACAUUGUUCAAACCUUAGUUAGAAUGCUAAAUAGAUAUCUAUUUACAGGUGAGCAAAGUUUCAAGUGUGUUUGUUAAAUUUAGUUCUUCAUUUAUAGUGA
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Structure
        10          20        30        40        50        60          
CCAUUUGUAUUGAGUAU--|        UAU            A      AA   UUAGUUAGAAUGCUAA 
                   AAAUUUAAC   UGCACUUGAAAC UUGUUC  ACC                \
                   UUUAAAUUG   GUGUGAACUUUG AACGAG  UGG                A
AGUGAUAUUUACUUCUUGA^        UUU            A      --   ACAUUUAUCUAUAGAU 
       130       120       110       100        90          80
Deep sequencing
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CommentIt is not clear whether this is a descendant of the original Mir-87-P1 or -P2 gene.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Bko-Mir-87-o7_5p*

mirBase accessionNone
Sequence
0- GCACUUGAAACAUUGUUCAAACC -23
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Mature sequence

Bko-Mir-87-o7_3p

mirBase accessionNone
Sequence
57- GUGAGCAAAGUUUCAAGUGUGU -79
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